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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040823 through 18771 annotations produced 1 hits



dpr6 (dpr6):

Annotation Number : CG14162
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040823
Gbrowse : chr3L:9967718-10034403 (+) // 99.82 //
Probeset : 1628063_at
Accessions : protein= NP_652439;, nucleotide= NM_144182;
FlyMine data for FBgn0040823.
BDGP gene expression has embryonic in situ data for CG14162: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0040823 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain97 ± 54 of 4 7.20Up
Head13 ± 22 of 4 1.00None
Eye9 ± 04 of 4 0.67None
Thoracicoabdominal ganglion56 ± 24 of 4 4.20Up
Salivary gland34 ± 20 of 4 2.54Up
Crop14 ± 30 of 4 1.10None
Midgut21 ± 22 of 4 1.60Up
Tubule15 ± 12 of 4 1.10None
Hindgut12 ± 11 of 4 0.90None
Heart3 ± 10 of 4 0.26Down
Fat body14 ± 50 of 4 1.07None
Ovary20 ± 24 of 4 1.50None
Testis5 ± 21 of 4 0.40Down
Male accessory glands14 ± 21 of 4 1.10None
Virgin spermatheca17 ± 23 of 4 1.29None
Mated spermatheca22 ± 43 of 4 1.69None
Adult carcass14 ± 30 of 4 1.10None
Larval CNS30 ± 74 of 4 2.24Up
Larval Salivary gland9 ± 21 of 4 0.73None
Larval midgut17 ± 22 of 4 1.31None
Larval tubule19 ± 13 of 4 1.40Up
Larval hindgut12 ± 10 of 4 0.90None
Larval fat body17 ± 12 of 4 1.30None
Larval trachea8 ± 21 of 4 0.60None
Larval carcass14 ± 40 of 4 1.05None
S2 cells (growing)8 ± 01 of 4 0.60Down
Whole fly13 ± 13 of 4

Looking for FBgn0040823. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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