Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040827 through 18771 annotations produced 1 hits



(CG13315):

Annotation Number : CG13315
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040827
Gbrowse : chr3L:9089975-9090596 (+) // 100.0 //
Probeset : 1634002_at
Accessions : protein= NP_652443;, nucleotide= NM_144186;
FlyMine data for FBgn0040827.
BDGP gene expression has embryonic in situ data for CG13315: 9 pix of staining in 2 body parts.
BioGrid reports that CG13315 interacts with CG7885 .
VDRC has 3 RNAi stocks for FBgn0040827 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain163 ± 104 of 4 0.10Down
Head4322 ± 2734 of 4 1.50Up
Eye2747 ± 2664 of 4 0.96None
Thoracicoabdominal ganglion183 ± 324 of 4 0.10Down
Salivary gland39 ± 23 of 4 0.01Down
Crop175 ± 274 of 4 0.10Down
Midgut6095 ± 2024 of 4 2.10Up
Tubule6636 ± 3934 of 4 2.30Up
Hindgut4237 ± 1354 of 4 1.50Up
Heart6754 ± 5504 of 4 2.37Up
Fat body6589 ± 7264 of 4 2.31Up
Ovary14 ± 14 of 4 0.00Down
Testis360 ± 574 of 4 0.10Down
Male accessory glands24 ± 24 of 4 0.00Down
Virgin spermatheca4088 ± 1704 of 4 1.43Up
Mated spermatheca4378 ± 904 of 4 1.53Up
Adult carcass5796 ± 3254 of 4 2.00Up
Larval CNS20 ± 54 of 4 0.01Down
Larval Salivary gland68 ± 134 of 4 0.02Down
Larval midgut4029 ± 3624 of 4 1.41Up
Larval tubule4594 ± 1984 of 4 1.60Up
Larval hindgut1284 ± 1164 of 4 0.45Down
Larval fat body3554 ± 3454 of 4 1.20None
Larval trachea99 ± 664 of 4 0.03Down
Larval carcass26 ± 74 of 4 0.01Down
S2 cells (growing)61 ± 34 of 4 0.02Down
Whole fly2853 ± 1174 of 4

Looking for FBgn0040827. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime