Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040828 through 18771 annotations produced 1 hits



(CG13306):

Annotation Number : CG13306
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040828
Gbrowse : chr3L:8742374-8742659 (-) // 100.0 //
Probeset : 1623658_at
Accessions : protein= NP_652444;, nucleotide= NM_144187;
FlyMine data for FBgn0040828.
VDRC has 3 RNAi stocks for FBgn0040828 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head13 13 of 4 0.90None
Eye6 10 of 4 0.40Down
Thoracicoabdominal ganglion3 10 of 4 0.20Down
Salivary gland8 20 of 4 0.55None
Crop54 24 of 4 3.40Up
Midgut1 00 of 4 0.10Down
Tubule1 00 of 4 0.10Down
Hindgut15 10 of 4 0.90None
Heart41 04 of 4 2.61Up
Fat body1 10 of 4 0.12Down
Ovary1 00 of 4 0.10Down
Testis5 00 of 4 0.30Down
Male accessory glands20 42 of 4 1.30None
Virgin spermatheca5 00 of 4 0.34Down
Mated spermatheca7 11 of 4 0.48Down
Adult carcass63 114 of 4 4.00Up
Larval CNS0 00 of 4 0.04Down
Larval Salivary gland2 10 of 4 0.16Down
Larval midgut0 00 of 4 0.05Down
Larval tubule1 10 of 4 0.10Down
Larval hindgut8 11 of 4 0.55Down
Larval fat body3 10 of 4 0.20Down
Larval trachea3 20 of 4 0.21Down
Larval carcass31 34 of 4 1.95Up
S2 cells (growing)0 00 of 4 0.03Down
Whole fly16 24 of 4

Looking for FBgn0040828. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime