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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040832 through 18771 annotations produced 1 hits



(CG8012):

Annotation Number : CG8012
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040832
Gbrowse : chr3L:8208538-8209298 (+) // 99.43 //
Probeset : 1636423_at
Accessions : protein= NP_652448;, nucleotide= NM_144191;
FlyMine data for FBgn0040832.
BDGP gene expression has embryonic in situ data for CG8012: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0040832 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain75 ± 24 of 4 0.60Down
Head174 ± 154 of 4 1.40Up
Eye54 ± 74 of 4 0.45Down
Thoracicoabdominal ganglion81 ± 44 of 4 0.70Down
Salivary gland213 ± 204 of 4 1.75Up
Crop179 ± 134 of 4 1.50Up
Midgut375 ± 34 of 4 3.10Up
Tubule225 ± 334 of 4 1.80Up
Hindgut1006 ± 244 of 4 8.30Up
Heart560 ± 214 of 4 4.60Up
Fat body485 ± 444 of 4 3.98Up
Ovary29 ± 04 of 4 0.20Down
Testis107 ± 64 of 4 0.90None
Male accessory glands224 ± 164 of 4 1.80Up
Virgin spermatheca139 ± 124 of 4 1.15None
Mated spermatheca149 ± 74 of 4 1.22Up
Adult carcass495 ± 134 of 4 4.10Up
Larval CNS102 ± 134 of 4 0.84None
Larval Salivary gland2 ± 00 of 4 0.02Down
Larval midgut140 ± 74 of 4 1.15None
Larval tubule21 ± 24 of 4 0.20Down
Larval hindgut176 ± 94 of 4 1.45Up
Larval fat body28 ± 42 of 4 0.20Down
Larval trachea2680 ± 1914 of 421.99Up
Larval carcass279 ± 174 of 4 2.29Up
S2 cells (growing)2 ± 00 of 4 0.02Down
Whole fly121 ± 44 of 4

Looking for FBgn0040832. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime