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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040837 through 18771 annotations produced 1 hits



(CG8620):

Annotation Number : CG8620
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040837
Gbrowse : chr3L:7151198-7152010 (+) // 100.0 //
Probeset : 1623714_at
Accessions : protein= NP_001137895; /// NP_652453;, nucleotide= NM_001144423; /// NM_144196;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0040837.
VDRC has 1 RNAi stocks for FBgn0040837 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 ± 14 of 4 1.10None
Head7 ± 20 of 4 0.50Down
Eye3 ± 20 of 4 0.19Down
Thoracicoabdominal ganglion17 ± 23 of 4 1.10None
Salivary gland7 ± 30 of 4 0.43Down
Crop38 ± 54 of 4 2.30Up
Midgut35 ± 22 of 4 2.10Up
Tubule979 ± 1254 of 458.70Up
Hindgut16 ± 01 of 4 1.00None
Heart7 ± 21 of 4 0.45Down
Fat body9 ± 100 of 4 0.58None
Ovary0 ± 00 of 4 0.00Down
Testis5 ± 10 of 4 0.30Down
Male accessory glands13 ± 21 of 4 0.80None
Virgin spermatheca5 ± 31 of 4 0.31Down
Mated spermatheca5 ± 20 of 4 0.30Down
Adult carcass5 ± 20 of 4 0.30Down
Larval CNS10 ± 10 of 4 0.60Down
Larval Salivary gland1 ± 00 of 4 0.06Down
Larval midgut15 ± 10 of 4 0.92None
Larval tubule94 ± 44 of 4 5.70Up
Larval hindgut19 ± 33 of 4 1.19None
Larval fat body6 ± 30 of 4 0.40Down
Larval trachea9 ± 62 of 4 0.57None
Larval carcass11 ± 20 of 4 0.67None
S2 cells (growing)20 ± 13 of 4 1.25None
Whole fly16 ± 13 of 4

Looking for FBgn0040837. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime