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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040842 through 18771 annotations produced 1 hits



(CG15212):

Annotation Number : CG15212
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040842
Gbrowse : chr3L:5124649-5125229 (+) // 100.0 //
Probeset : 1630621_at
Accessions : protein= NP_652458;, nucleotide= NM_144201;
FlyMine data for FBgn0040842.
BDGP gene expression has embryonic in situ data for CG15212: 12 pix of staining in 4 body parts.
VDRC has 2 RNAi stocks for FBgn0040842 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.10None
Head7 ± 00 of 4 0.20None
Eye6 ± 10 of 4 0.22None
Thoracicoabdominal ganglion2 ± 00 of 4 0.10None
Salivary gland12 ± 50 of 4 0.43None
Crop90 ± 34 of 4 3.00Up
Midgut7 ± 11 of 4 0.30None
Tubule6 ± 00 of 4 0.20Down
Hindgut8 ± 00 of 4 0.30None
Heart3 ± 10 of 4 0.10None
Fat body6 ± 30 of 4 0.21None
Ovary4 ± 11 of 4 0.20None
Testis4 ± 11 of 4 0.20None
Male accessory glands10 ± 40 of 4 0.30None
Virgin spermatheca6 ± 10 of 4 0.22None
Mated spermatheca7 ± 20 of 4 0.23None
Adult carcass6 ± 10 of 4 0.20None
Larval CNS5 ± 00 of 4 0.17None
Larval Salivary gland7 ± 00 of 4 0.25None
Larval midgut57 ± 104 of 4 1.91None
Larval tubule8 ± 12 of 4 0.30None
Larval hindgut745 ± 894 of 424.84Up
Larval fat body9 ± 31 of 4 0.30None
Larval trachea2 ± 20 of 4 0.10None
Larval carcass150 ± 244 of 4 5.02Up
S2 cells (growing)8 ± 10 of 4 0.27None
Whole fly30 ± 113 of 4

Looking for FBgn0040842. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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