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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040871 through 18771 annotations produced 1 hits



(CG12479):

Annotation Number : CG12479
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040871
Gbrowse : chrX:14045722-14045947 (-) // 100.0 //
Probeset : 1638644_at
Accessions : protein= NP_652484;, nucleotide= NM_144227;
FlyMine data for FBgn0040871.
VDRC has 1 RNAi stocks for FBgn0040871 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.10Down
Head8 ± 20 of 4 0.20Down
Eye6 ± 10 of 4 0.14Down
Thoracicoabdominal ganglion9 ± 10 of 4 0.20Down
Salivary gland21 ± 90 of 4 0.47None
Crop13 ± 10 of 4 0.30Down
Midgut6 ± 10 of 4 0.10Down
Tubule10 ± 11 of 4 0.20Down
Hindgut12 ± 31 of 4 0.30Down
Heart8 ± 10 of 4 0.20Down
Fat body17 ± 00 of 4 0.39Down
Ovary9 ± 01 of 4 0.20Down
Testis439 ± 274 of 4 9.60Up
Male accessory glands17 ± 51 of 4 0.40Down
Virgin spermatheca13 ± 20 of 4 0.30Down
Mated spermatheca18 ± 31 of 4 0.39Down
Adult carcass15 ± 20 of 4 0.30Down
Larval CNS11 ± 33 of 4 0.26Down
Larval Salivary gland14 ± 10 of 4 0.32Down
Larval midgut25 ± 30 of 4 0.56Down
Larval tubule10 ± 20 of 4 0.20Down
Larval hindgut11 ± 22 of 4 0.24Down
Larval fat body61 ± 213 of 4 1.30None
Larval trachea12 ± 81 of 4 0.26Down
Larval carcass13 ± 10 of 4 0.30Down
S2 cells (growing)11 ± 30 of 4 0.25Down
Whole fly45 ± 34 of 4

Looking for FBgn0040871. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime