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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040877 through 18771 annotations produced 1 hits



(CG12994):

Annotation Number : CG12994
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040877
Gbrowse : chrX:17316888-17317159 (-) // 100.0 //
Probeset : 1624576_at
Accessions : protein= NP_652488;, nucleotide= NM_144231;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0040877.
BioGrid reports that CG12994 interacts with CG16853 .
VDRC has 2 RNAi stocks for FBgn0040877 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain143 74 of 414.70Up
Head34 64 of 4 3.60Up
Eye9 11 of 4 1.00None
Thoracicoabdominal ganglion102 44 of 410.50Up
Salivary gland13 51 of 4 1.43None
Crop2 10 of 4 0.30None
Midgut6 00 of 4 0.70None
Tubule6 00 of 4 0.60Down
Hindgut6 10 of 4 0.70None
Heart5 10 of 4 0.58None
Fat body14 61 of 4 1.49None
Ovary2 00 of 4 0.30None
Testis2 10 of 4 0.30None
Male accessory glands11 10 of 4 1.20None
Virgin spermatheca11 10 of 4 1.20None
Mated spermatheca12 00 of 4 1.31None
Adult carcass9 30 of 4 1.00None
Larval CNS17 44 of 4 1.81None
Larval Salivary gland8 12 of 4 0.89None
Larval midgut5 10 of 4 0.52None
Larval tubule7 00 of 4 0.80None
Larval hindgut7 02 of 4 0.72None
Larval fat body9 10 of 4 0.90None
Larval trachea5 21 of 4 0.56None
Larval carcass4 10 of 4 0.41None
S2 cells (growing)7 11 of 4 0.79None
Whole fly9 22 of 4

Looking for FBgn0040877. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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