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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040892 through 18771 annotations produced 1 hits



(CG14634):

Annotation Number : CG14634
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040892
Gbrowse : chrX:756768-757234 (+) // 100.0 //
Probeset : 1629100_at
Accessions : protein= NP_001036255;, nucleotide= NM_001042790;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0040892.
BioGrid reports that CG14634 interacts with CG18854 CG2017 CG17221 CG1775 CG2865 CG3052 CG4328 CG7570 CG7808 CG7995 CG8404 Dmel CG34353 .
VDRC has 3 RNAi stocks for FBgn0040892 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 11 of 4 1.40None
Head4 10 of 4 1.40None
Eye3 00 of 4 0.99None
Thoracicoabdominal ganglion2 00 of 4 0.80None
Salivary gland5 30 of 4 1.79None
Crop4 10 of 4 1.50None
Midgut2 00 of 4 0.80None
Tubule3 00 of 4 1.00None
Hindgut3 10 of 4 1.10None
Heart1 00 of 4 0.50None
Fat body8 23 of 4 2.62Up
Ovary2 00 of 4 0.60None
Testis29 54 of 4 9.30Up
Male accessory glands10 40 of 4 3.20None
Virgin spermatheca6 01 of 4 1.89None
Mated spermatheca6 10 of 4 2.06None
Adult carcass7 10 of 4 2.40Up
Larval CNS6 23 of 4 1.90None
Larval Salivary gland4 10 of 4 1.28None
Larval midgut2 00 of 4 0.61None
Larval tubule4 10 of 4 1.50None
Larval hindgut2 00 of 4 0.87None
Larval fat body2 10 of 4 0.70None
Larval trachea5 30 of 4 1.65None
Larval carcass2 00 of 4 0.64None
S2 cells (growing)3 10 of 4 0.99None
Whole fly3 10 of 4

Looking for FBgn0040892. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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