FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0040899 through 18771 annotations produced 1 hits

(CG17776):

Annotation Number : CG17776
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040899
Gbrowse : chrX:2078997-2079210 (+) // 100.0 //
Probeset : 1631915_at
Accessions : protein= NP_652509;, nucleotide= NM_144252;
FlyMine data for FBgn0040899.
BioGrid reports that CG17776 interacts with CG17841 CG18619 CG2146 CG2699 CG2765 CG32473 CG4183 CG6046 CG6803 CG8578 CG33134 Dmel CG17162 .
VDRC has 3 RNAi stocks for FBgn0040899 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	351 ± 6	4 of 4	1.00	None
Head	348 ± 13	4 of 4	1.00	None
Eye	372 ± 13	4 of 4	1.10	None
Thoracicoabdominal ganglion	423 ± 33	4 of 4	1.20	None
Salivary gland	657 ± 13	4 of 4	1.94	Up
Crop	270 ± 11	4 of 4	0.80	None
Midgut	229 ± 4	4 of 4	0.70	Down
Tubule	224 ± 10	4 of 4	0.70	Down
Hindgut	365 ± 9	4 of 4	1.10	None
Heart	455 ± 21	4 of 4	1.34	Up
Fat body	355 ± 28	4 of 4	1.05	None
Ovary	422 ± 8	4 of 4	1.20	Up
Testis	170 ± 1	4 of 4	0.50	Down
Male accessory glands	458 ± 23	4 of 4	1.30	Up
Virgin spermatheca	248 ± 11	4 of 4	0.73	Down
Mated spermatheca	275 ± 7	4 of 4	0.81	None
Adult carcass	372 ± 17	4 of 4	1.10	None
Larval CNS	389 ± 26	4 of 4	1.15	None
Larval Salivary gland	585 ± 11	4 of 4	1.72	Up
Larval midgut	190 ± 14	4 of 4	0.56	Down
Larval tubule	216 ± 6	4 of 4	0.60	Down
Larval hindgut	414 ± 14	4 of 4	1.22	Up
Larval fat body	196 ± 13	4 of 4	0.60	Down
Larval trachea	479 ± 36	4 of 4	1.41	Up
Larval carcass	388 ± 22	4 of 4	1.14	None
S2 cells (growing)	267 ± 3	4 of 4	0.79	None
Whole fly	339 ± 24	4 of 4

Looking for FBgn0040899. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720