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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040900 through 18771 annotations produced 1 hits



(CG17777):

Annotation Number : CG17777
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040900
Gbrowse : chrX:2081210-2081501 (+) // 100.0 //
Probeset : 1627632_at
Accessions : protein= NP_652510;, nucleotide= NM_144253;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0040900.
BioGrid reports that CG17777 interacts with CG31217 CG4491 CG5454 CG7381 CG2034 CG31550 CG33099 CG3367 CG3780 CG3906 CG4220 CG4586 Dmel CG34168 CG5146 CG5225 CG5358 CG6240 CG6707 CG7171 CG7354 CG7691 CG8556 CG9638 CG9755 .
VDRC has 3 RNAi stocks for FBgn0040900 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain39 ± 24 of 4 2.70None
Head22 ± 62 of 4 1.60None
Eye89 ± 204 of 4 6.10Up
Thoracicoabdominal ganglion7 ± 20 of 4 0.50None
Salivary gland4 ± 10 of 4 0.33None
Crop6 ± 20 of 4 0.50None
Midgut2 ± 00 of 4 0.20None
Tubule6 ± 00 of 4 0.40Down
Hindgut5 ± 20 of 4 0.40None
Heart2 ± 10 of 4 0.19None
Fat body14 ± 60 of 4 0.97None
Ovary13 ± 10 of 4 0.90None
Testis82 ± 14 of 4 5.60Up
Male accessory glands4 ± 00 of 4 0.30None
Virgin spermatheca9 ± 40 of 4 0.67None
Mated spermatheca5 ± 00 of 4 0.36None
Adult carcass53 ± 14 of 4 3.70Up
Larval CNS6 ± 40 of 4 0.47None
Larval Salivary gland5 ± 00 of 4 0.35None
Larval midgut11 ± 40 of 4 0.75None
Larval tubule8 ± 10 of 4 0.50None
Larval hindgut9 ± 20 of 4 0.66None
Larval fat body9 ± 20 of 4 0.70None
Larval trachea12 ± 60 of 4 0.84None
Larval carcass5 ± 00 of 4 0.36None
S2 cells (growing)4 ± 00 of 4 0.30None
Whole fly14 ± 40 of 4

Looking for FBgn0040900. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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