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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0040904 through 18771 annotations produced 1 hits


(CG15577):

Annotation Number : CG15577
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040904
Gbrowse : chrX:4170639-4170939 (-) // 100.0 //
Probeset : 1625863_at
Accessions : protein= NP_652513;, nucleotide= NM_144256;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0040904.
BioGrid reports that CG15577 interacts with CG6808 .
VDRC has 3 RNAi stocks for FBgn0040904 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head2 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland4 ± 10 of 4 0.04Down
Crop3 ± 10 of 4 0.00Down
Midgut2 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart2 ± 10 of 4 0.03Down
Fat body3 ± 20 of 4 0.03Down
Ovary1 ± 00 of 4 0.00Down
Testis1223 ± 254 of 413.00Up
Male accessory glands2 ± 00 of 4 0.00Down
Virgin spermatheca2 ± 10 of 4 0.02Down
Mated spermatheca3 ± 10 of 4 0.04Down
Adult carcass13 ± 10 of 4 0.10Down
Larval CNS1 ± 10 of 4 0.01Down
Larval Salivary gland4 ± 10 of 4 0.05Down
Larval midgut6 ± 20 of 4 0.06Down
Larval tubule2 ± 00 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.02Down
Larval fat body79 ± 354 of 4 0.80None
Larval trachea4 ± 71 of 4 0.05Down
Larval carcass0 ± 00 of 4 0.01Down
S2 cells (growing)4 ± 00 of 4 0.05Down
Whole fly94 ± 114 of 4

Looking for FBgn0040904. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime