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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040906 through 18771 annotations produced 1 hits



(CG15579):

Annotation Number : CG15579
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040906
Gbrowse : chrX:4205451-4205736 (-) // 100.0 //
Probeset : 1637476_at
Accessions : protein= NP_652515;, nucleotide= NM_144258;
FlyMine data for FBgn0040906.
VDRC has 3 RNAi stocks for FBgn0040906 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 10 of 4 0.40Down
Head1 ± 00 of 4 0.10Down
Eye0 ± 00 of 4 0.05Down
Thoracicoabdominal ganglion6 ± 10 of 4 0.40Down
Salivary gland4 ± 10 of 4 0.26Down
Crop2 ± 10 of 4 0.10Down
Midgut2 ± 00 of 4 0.10Down
Tubule3 ± 10 of 4 0.20Down
Hindgut1 ± 00 of 4 0.10Down
Heart6 ± 30 of 4 0.37None
Fat body6 ± 40 of 4 0.38Down
Ovary1 ± 00 of 4 0.10Down
Testis237 ± 114 of 414.80Up
Male accessory glands2 ± 00 of 4 0.20Down
Virgin spermatheca5 ± 20 of 4 0.33Down
Mated spermatheca3 ± 20 of 4 0.22Down
Adult carcass2 ± 00 of 4 0.20Down
Larval CNS7 ± 50 of 4 0.47None
Larval Salivary gland3 ± 10 of 4 0.21Down
Larval midgut1 ± 00 of 4 0.11Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut2 ± 00 of 4 0.14Down
Larval fat body9 ± 61 of 4 0.60None
Larval trachea2 ± 20 of 4 0.13Down
Larval carcass3 ± 10 of 4 0.22Down
S2 cells (growing)1 ± 00 of 4 0.12Down
Whole fly16 ± 20 of 4

Looking for FBgn0040906. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime