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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040907 through 18771 annotations produced 1 hits



mitochondrial ribosomal protein L33 (mRpL33):

Annotation Number : CG3712
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040907
Gbrowse : chrX:4215785-4216234 (-) // 100.0 //
Probeset : 1623683_at
Accessions : protein= NP_524981;, nucleotide= NM_080242;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from sequence o
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0040907.
VDRC has 3 RNAi stocks for FBgn0040907 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain485 ± 274 of 4 1.50Up
Head488 ± 244 of 4 1.60Up
Eye762 ± 294 of 4 2.43Up
Thoracicoabdominal ganglion518 ± 274 of 4 1.70Up
Salivary gland626 ± 334 of 4 2.00Up
Crop334 ± 184 of 4 1.10None
Midgut433 ± 84 of 4 1.40Up
Tubule348 ± 114 of 4 1.10Up
Hindgut407 ± 124 of 4 1.30Up
Heart563 ± 414 of 4 1.80Up
Fat body458 ± 264 of 4 1.46Up
Ovary427 ± 84 of 4 1.40Up
Testis55 ± 24 of 4 0.20Down
Male accessory glands310 ± 64 of 4 1.00None
Virgin spermatheca497 ± 304 of 4 1.59Up
Mated spermatheca484 ± 204 of 4 1.55Up
Adult carcass295 ± 94 of 4 0.90None
Larval CNS618 ± 324 of 4 1.97Up
Larval Salivary gland557 ± 84 of 4 1.78Up
Larval midgut413 ± 104 of 4 1.32Up
Larval tubule447 ± 94 of 4 1.40Up
Larval hindgut469 ± 134 of 4 1.50Up
Larval fat body227 ± 284 of 4 0.70None
Larval trachea635 ± 404 of 4 2.03Up
Larval carcass429 ± 434 of 4 1.37None
S2 cells (growing)561 ± 84 of 4 1.79Up
Whole fly313 ± 294 of 4

Looking for FBgn0040907. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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