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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040922 through 18771 annotations produced 1 hits



(CG15036):

Annotation Number : CG15036
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040922
Gbrowse : chrX:7318626-7318845 (-) // 100.0 //
Probeset : 1637931_at
Accessions : protein= NP_652530;, nucleotide= NM_144273;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0040922.
BioGrid reports that CG15036 interacts with CG6443 .
VDRC has 2 RNAi stocks for FBgn0040922 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.60None
Head4 ± 10 of 4 2.90None
Eye0 ± 00 of 4 0.23None
Thoracicoabdominal ganglion0 ± 00 of 4 0.50None
Salivary gland5 ± 10 of 4 3.61None
Crop1 ± 00 of 4 1.20None
Midgut0 ± 00 of 4 0.50None
Tubule1 ± 00 of 4 0.90None
Hindgut1 ± 00 of 4 1.10None
Heart0 ± 00 of 4 0.23None
Fat body1 ± 10 of 4 1.07None
Ovary1 ± 00 of 4 0.80None
Testis1 ± 00 of 4 1.10None
Male accessory glands5 ± 20 of 4 4.10None
Virgin spermatheca0 ± 00 of 4 0.59None
Mated spermatheca0 ± 00 of 4 0.48None
Adult carcass3 ± 00 of 4 2.80None
Larval CNS0 ± 00 of 4 0.43None
Larval Salivary gland1 ± 00 of 4 1.14None
Larval midgut0 ± 00 of 4 0.61None
Larval tubule3 ± 10 of 4 2.30None
Larval hindgut0 ± 00 of 4 0.34None
Larval fat body1 ± 00 of 4 0.80None
Larval trachea0 ± 00 of 4 0.29None
Larval carcass2 ± 10 of 4 1.55None
S2 cells (growing)0 ± 00 of 4 0.50None
Whole fly1 ± 00 of 4

Looking for FBgn0040922. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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