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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040931 through 18771 annotations produced 1 hits



(CG9034):

Annotation Number : CG9034
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040931
Gbrowse : chrX:9053544-9054018 (-) // 99.05 //
Probeset : 1625847_at
Accessions : protein= NP_652538;, nucleotide= NM_144281;
FlyMine data for FBgn0040931.
VDRC has 3 RNAi stocks for FBgn0040931 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain649 ± 94 of 4 1.30None
Head725 ± 374 of 4 1.50Up
Eye976 ± 344 of 4 1.97Up
Thoracicoabdominal ganglion716 ± 384 of 4 1.40Up
Salivary gland974 ± 94 of 4 1.96Up
Crop481 ± 234 of 4 1.00None
Midgut697 ± 304 of 4 1.40Up
Tubule409 ± 154 of 4 0.80Down
Hindgut913 ± 134 of 4 1.80Up
Heart775 ± 284 of 4 1.56Up
Fat body921 ± 1094 of 4 1.85Up
Ovary286 ± 154 of 4 0.60Down
Testis274 ± 74 of 4 0.60Down
Male accessory glands397 ± 364 of 4 0.80None
Virgin spermatheca248 ± 174 of 4 0.50Down
Mated spermatheca231 ± 124 of 4 0.47Down
Adult carcass912 ± 134 of 4 1.80Up
Larval CNS550 ± 644 of 4 1.11None
Larval Salivary gland691 ± 124 of 4 1.39Up
Larval midgut606 ± 204 of 4 1.22None
Larval tubule405 ± 394 of 4 0.80None
Larval hindgut687 ± 294 of 4 1.38Up
Larval fat body209 ± 74 of 4 0.40Down
Larval trachea433 ± 424 of 4 0.87None
Larval carcass579 ± 824 of 4 1.17None
S2 cells (growing)379 ± 34 of 4 0.76None
Whole fly496 ± 394 of 4

Looking for FBgn0040931. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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