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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040964 through 18771 annotations produced 1 hits



(CG18661):

Annotation Number : CG18661
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040964
Gbrowse : chr2L:8997649-8998545 (+) // 100.0 //
Probeset : 1623883_at
Accessions : protein= NP_652562;, nucleotide= NM_144305;
FlyMine data for FBgn0040964.
VDRC has 1 RNAi stocks for FBgn0040964 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain91 ± 14 of 4 2.80Up
Head46 ± 14 of 4 1.40Up
Eye60 ± 24 of 4 1.87Up
Thoracicoabdominal ganglion125 ± 34 of 4 3.90Up
Salivary gland8 ± 30 of 4 0.25Down
Crop37 ± 24 of 4 1.20None
Midgut27 ± 30 of 4 0.90None
Tubule2 ± 00 of 4 0.10Down
Hindgut27 ± 22 of 4 0.80None
Heart18 ± 24 of 4 0.56Down
Fat body29 ± 64 of 4 0.92None
Ovary61 ± 34 of 4 1.90Up
Testis34 ± 34 of 4 1.10None
Male accessory glands11 ± 50 of 4 0.40Down
Virgin spermatheca43 ± 24 of 4 1.34Up
Mated spermatheca45 ± 64 of 4 1.41None
Adult carcass25 ± 23 of 4 0.80None
Larval CNS78 ± 104 of 4 2.41Up
Larval Salivary gland4 ± 10 of 4 0.15Down
Larval midgut14 ± 40 of 4 0.45Down
Larval tubule18 ± 50 of 4 0.60None
Larval hindgut13 ± 51 of 4 0.40Down
Larval fat body19 ± 11 of 4 0.60Down
Larval trachea11 ± 53 of 4 0.37Down
Larval carcass9 ± 20 of 4 0.29Down
S2 cells (growing)67 ± 54 of 4 2.08Up
Whole fly32 ± 04 of 4

Looking for FBgn0040964. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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