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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040967 through 18771 annotations produced 1 hits



(CG18666):

Annotation Number : CG18666
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040967
Gbrowse : chr2L:11034851-11035235 (+) // 100.0 //
Probeset : 1625983_at
Accessions : protein= NP_652565;, nucleotide= NM_144308;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0040967.
VDRC has 2 RNAi stocks for FBgn0040967 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.10Down
Head1 ± 00 of 4 0.10Down
Eye4 ± 10 of 4 0.46None
Thoracicoabdominal ganglion0 ± 00 of 4 0.10Down
Salivary gland2 ± 10 of 4 0.30Down
Crop1 ± 00 of 4 0.20Down
Midgut1 ± 00 of 4 0.10Down
Tubule1 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.10Down
Heart2 ± 00 of 4 0.28Down
Fat body3 ± 20 of 4 0.37Down
Ovary1 ± 00 of 4 0.10Down
Testis149 ± 14 of 415.60Up
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca2 ± 10 of 4 0.26Down
Mated spermatheca2 ± 10 of 4 0.20Down
Adult carcass1 ± 00 of 4 0.10Down
Larval CNS1 ± 00 of 4 0.12Down
Larval Salivary gland2 ± 10 of 4 0.29Down
Larval midgut1 ± 00 of 4 0.17Down
Larval tubule2 ± 10 of 4 0.30Down
Larval hindgut1 ± 00 of 4 0.17Down
Larval fat body22 ± 112 of 4 2.30None
Larval trachea5 ± 30 of 4 0.60None
Larval carcass0 ± 00 of 4 0.07Down
S2 cells (growing)1 ± 00 of 4 0.13Down
Whole fly9 ± 11 of 4

Looking for FBgn0040967. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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