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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040968 through 18771 annotations produced 1 hits



/// CG42501 (CG14933 /// CG42486):

Annotation Number : CG14933
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040968 /// FBgn0259989
Gbrowse : chr2L:11842826-11843778 (+) // 100.0 //
Probeset : 1623428_at
Accessions : protein= NP_001162960; /// NP_652566;, nucleotide= NM_001169489; /// NM_144309;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0040968 /// FBgn0259989.
BioGrid reports that CG14933 interacts with CG3954 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain609 204 of 4 0.80Down
Head1953 884 of 4 2.50Up
Eye1190 1694 of 4 1.49None
Thoracicoabdominal ganglion1262 314 of 4 1.60Up
Salivary gland1088 714 of 4 1.37Up
Crop2330 1064 of 4 2.90Up
Midgut253 94 of 4 0.30Down
Tubule1262 174 of 4 1.60Up
Hindgut3420 824 of 4 4.30Up
Heart3320 2634 of 4 4.17Up
Fat body3413 2874 of 4 4.28Up
Ovary9 14 of 4 0.00Down
Testis434 294 of 4 0.50Down
Male accessory glands56 54 of 4 0.10Down
Virgin spermatheca3117 1124 of 4 3.91Up
Mated spermatheca2378 1634 of 4 2.98Up
Adult carcass2508 824 of 4 3.10Up
Larval CNS736 864 of 4 0.92None
Larval Salivary gland211 104 of 4 0.26Down
Larval midgut349 374 of 4 0.44Down
Larval tubule1135 394 of 4 1.40Up
Larval hindgut715 324 of 4 0.90None
Larval fat body803 894 of 4 1.00None
Larval trachea478 814 of 4 0.60Down
Larval carcass235 284 of 4 0.30Down
S2 cells (growing)39 44 of 4 0.05Down
Whole fly796 404 of 4

Looking for FBgn0040968. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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