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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040972 through 18771 annotations produced 1 hits



(CG16978):

Annotation Number : CG16978
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040972
Gbrowse : chr2L:13143306-13144490 (-) // 100.0 //
Probeset : 1626184_at
Accessions : protein= NP_652569;, nucleotide= NM_144312;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0040972.
BioGrid reports that CG16978 interacts with CG7211 CG9035 CG6105 .
VDRC has 2 RNAi stocks for FBgn0040972 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head51 54 of 4 3.60Up
Eye11 11 of 4 0.78None
Thoracicoabdominal ganglion4 00 of 4 0.30Down
Salivary gland5 10 of 4 0.35Down
Crop8 21 of 4 0.60None
Midgut3 00 of 4 0.20Down
Tubule2 00 of 4 0.20Down
Hindgut1 00 of 4 0.10Down
Heart3 10 of 4 0.27Down
Fat body8 20 of 4 0.58Down
Ovary0 00 of 4 0.00Down
Testis1 00 of 4 0.10Down
Male accessory glands6 10 of 4 0.40Down
Virgin spermatheca3 00 of 4 0.23Down
Mated spermatheca2 00 of 4 0.16Down
Adult carcass76 74 of 4 5.30Up
Larval CNS1 00 of 4 0.08Down
Larval Salivary gland2 10 of 4 0.20Down
Larval midgut4 10 of 4 0.31Down
Larval tubule2 10 of 4 0.20Down
Larval hindgut3 10 of 4 0.21Down
Larval fat body2 10 of 4 0.20Down
Larval trachea0 00 of 4 0.05Down
Larval carcass1 00 of 4 0.13Down
S2 cells (growing)0 00 of 4 0.06Down
Whole fly14 12 of 4

Looking for FBgn0040972. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime