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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040984 through 18771 annotations produced 1 hits



(CG4440):

Annotation Number : CG4440
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040984
Gbrowse : chr2L:16329926-16330369 (+) // 100.0 //
Probeset : 1628720_at
Accessions : protein= NP_652577;, nucleotide= NM_144320;
FlyMine data for FBgn0040984.
BDGP gene expression has embryonic in situ data for CG4440: 24 pix of staining in 20 body parts.
VDRC has 3 RNAi stocks for FBgn0040984 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00None
Head2 ± 10 of 4 0.00None
Eye2 ± 00 of 4 0.04None
Thoracicoabdominal ganglion2 ± 10 of 4 0.10None
Salivary gland19 ± 42 of 4 0.43None
Crop6 ± 20 of 4 0.10None
Midgut1 ± 00 of 4 0.00None
Tubule3 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.00None
Heart0 ± 00 of 4 0.01None
Fat body4 ± 30 of 4 0.09None
Ovary2 ± 01 of 4 0.10None
Testis5 ± 02 of 4 0.10None
Male accessory glands6 ± 10 of 4 0.10None
Virgin spermatheca3 ± 00 of 4 0.07None
Mated spermatheca3 ± 00 of 4 0.06None
Adult carcass2 ± 10 of 4 0.10None
Larval CNS1 ± 10 of 4 0.04None
Larval Salivary gland4 ± 10 of 4 0.09None
Larval midgut3 ± 10 of 4 0.07None
Larval tubule1 ± 00 of 4 0.00None
Larval hindgut3 ± 10 of 4 0.07None
Larval fat body5 ± 10 of 4 0.10None
Larval trachea1 ± 10 of 4 0.03None
Larval carcass1 ± 00 of 4 0.04None
S2 cells (growing)0 ± 00 of 4 0.01None
Whole fly46 ± 313 of 4

Looking for FBgn0040984. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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