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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040993 through 18771 annotations produced 1 hits



/// (CG17325 /// CG42305):

Annotation Number : CG17325
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040993 /// FBgn0259201
Gbrowse : chr2L:18813012-18813941 (+) // 100.0 //
Probeset : 1630299_at
Accessions : protein= NP_001137836; /// NP_001137837; /// NP_001137838; /// NP_652586;, nucleotide= NM_001144364; /// NM_001144365; /// NM_001144366; /// NM_144329;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0040993 /// FBgn0259201.
BioGrid reports that CG17325 interacts with CG9578 CG9665 CG8291 CG33528 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 ± 23 of 4 0.00Down
Head1443 ± 1424 of 4 5.30Up
Eye440 ± 684 of 4 1.62None
Thoracicoabdominal ganglion17 ± 62 of 4 0.10Down
Salivary gland23 ± 91 of 4 0.09Down
Crop88 ± 234 of 4 0.30Down
Midgut12 ± 21 of 4 0.00Down
Tubule10 ± 20 of 4 0.00Down
Hindgut14 ± 23 of 4 0.10Down
Heart76 ± 134 of 4 0.28Down
Fat body71 ± 444 of 4 0.26Down
Ovary3 ± 10 of 4 0.00Down
Testis4 ± 11 of 4 0.00Down
Male accessory glands194 ± 74 of 4 0.70None
Virgin spermatheca8 ± 22 of 4 0.03Down
Mated spermatheca12 ± 03 of 4 0.05Down
Adult carcass1549 ± 2124 of 4 5.70Up
Larval CNS5 ± 13 of 4 0.02Down
Larval Salivary gland10 ± 10 of 4 0.04Down
Larval midgut13 ± 11 of 4 0.05Down
Larval tubule7 ± 11 of 4 0.00Down
Larval hindgut206 ± 234 of 4 0.76None
Larval fat body9 ± 30 of 4 0.00Down
Larval trachea399 ± 2724 of 4 1.47None
Larval carcass5063 ± 1874 of 418.69Up
S2 cells (growing)4 ± 00 of 4 0.02Down
Whole fly271 ± 334 of 4

Looking for FBgn0040993. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime