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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0041004 through 18771 annotations produced 1 hits



(CG17715):

Annotation Number : CG17715
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041004
Gbrowse : chr2L:22736957-22742972 (+) // 100.0 //
Probeset : 1629257_s_at
Accessions : protein= NP_001036407; /// NP_001036408; /// NP_001036409; /// NP_001036410; /// NP_001036411; /// NP_001036412;, nucleotide= NM_001042942; /// NM_001042943; /// NM_001042944; /// NM_001042945; /// NM_001042946; /// NM_001042947;
FlyMine data for FBgn0041004.
VDRC has 2 RNAi stocks for FBgn0041004 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain195 84 of 4 0.90Down
Head146 44 of 4 0.70Down
Eye226 84 of 4 1.05None
Thoracicoabdominal ganglion136 114 of 4 0.60Down
Salivary gland182 104 of 4 0.84Down
Crop256 64 of 4 1.20Up
Midgut154 54 of 4 0.70Down
Tubule334 194 of 4 1.50Up
Hindgut152 24 of 4 0.70Down
Heart292 84 of 4 1.35Up
Fat body107 154 of 4 0.50Down
Ovary468 124 of 4 2.20Up
Testis39 24 of 4 0.20Down
Male accessory glands110 54 of 4 0.50Down
Virgin spermatheca132 84 of 4 0.61Down
Mated spermatheca134 54 of 4 0.62Down
Adult carcass127 54 of 4 0.60Down
Larval CNS161 84 of 4 0.74Down
Larval Salivary gland145 34 of 4 0.67Down
Larval midgut144 44 of 4 0.67Down
Larval tubule264 104 of 4 1.20Up
Larval hindgut187 34 of 4 0.87Down
Larval fat body167 134 of 4 0.80Down
Larval trachea216 84 of 4 1.00None
Larval carcass197 124 of 4 0.91None
S2 cells (growing)214 34 of 4 0.99None
Whole fly216 84 of 4

Looking for FBgn0041004. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime