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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0041092 through 18771 annotations produced 1 hits



taiman (tai):

Annotation Number : CG13109
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041092
Gbrowse : chr2L:9166801-9246386 (+) // 100.0 //
Probeset : 1632385_at
Accessions : protein= NP_523521;, nucleotide= NM_078797;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 00082
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // infer
FlyMine data for FBgn0041092.
BioGrid reports that CG13109 interacts with CG3978 CG7103 .
TRiP has 3 RNAi stocks for FBgn0041092 available for purchase.
VDRC has 1 RNAi stocks for FBgn0041092 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain54 ± 44 of 4 2.20None
Head22 ± 14 of 4 0.90None
Eye27 ± 24 of 4 1.12None
Thoracicoabdominal ganglion24 ± 34 of 4 1.00None
Salivary gland32 ± 44 of 4 1.30None
Crop45 ± 34 of 4 1.80Up
Midgut49 ± 24 of 4 2.00Up
Tubule40 ± 14 of 4 1.60Up
Hindgut41 ± 24 of 4 1.70Up
Heart45 ± 44 of 4 1.83Up
Fat body39 ± 44 of 4 1.58Up
Ovary26 ± 24 of 4 1.10None
Testis22 ± 14 of 4 0.90None
Male accessory glands52 ± 84 of 4 2.10Up
Virgin spermatheca10 ± 24 of 4 0.43Down
Mated spermatheca19 ± 24 of 4 0.77None
Adult carcass26 ± 43 of 4 1.00None
Larval CNS38 ± 44 of 4 1.53Up
Larval Salivary gland58 ± 34 of 4 2.32Up
Larval midgut22 ± 24 of 4 0.91None
Larval tubule54 ± 44 of 4 2.20Up
Larval hindgut37 ± 34 of 4 1.51Up
Larval fat body102 ± 64 of 4 4.10Up
Larval trachea70 ± 104 of 4 2.81Up
Larval carcass68 ± 124 of 4 2.75Up
S2 cells (growing)67 ± 24 of 4 2.70Up
Whole fly25 ± 24 of 4

Looking for FBgn0041092. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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