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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0041094 through 18771 annotations produced 1 hits



scylla (scyl):

Annotation Number : CG7590
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041094
Gbrowse : chr3L:11245408-11248621 (+) // 100.0 //
Probeset : 1627101_at
Accessions : protein= NP_648456; /// NP_996043;, nucleotide= NM_140199; /// NM_206321;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or struct
FlyMine data for FBgn0041094.
BioGrid reports that CG7590 interacts with CG9986 .
VDRC has 2 RNAi stocks for FBgn0041094 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain442 174 of 4 1.40Up
Head321 314 of 4 1.00None
Eye371 94 of 4 1.18Up
Thoracicoabdominal ganglion427 534 of 4 1.40None
Salivary gland118 144 of 4 0.38Down
Crop720 444 of 4 2.30Up
Midgut476 204 of 4 1.50Up
Tubule127 294 of 4 0.40Down
Hindgut647 244 of 4 2.10Up
Heart1244 794 of 4 3.96Up
Fat body326 814 of 4 1.04None
Ovary367 184 of 4 1.20None
Testis104 84 of 4 0.30Down
Male accessory glands948 354 of 4 3.00Up
Virgin spermatheca53 84 of 4 0.17Down
Mated spermatheca60 54 of 4 0.19Down
Adult carcass373 664 of 4 1.20None
Larval CNS508 394 of 4 1.62Up
Larval Salivary gland275 194 of 4 0.88None
Larval midgut270 144 of 4 0.86Down
Larval tubule1147 714 of 4 3.70Up
Larval hindgut567 754 of 4 1.81Up
Larval fat body58 54 of 4 0.20Down
Larval trachea1183 1404 of 4 3.77Up
Larval carcass185 334 of 4 0.59Down
S2 cells (growing)111 104 of 4 0.36Down
Whole fly314 84 of 4

Looking for FBgn0041094. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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