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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0041100 through 18771 annotations produced 1 hits



dParkin (park):

Annotation Number : CG10523
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041100
Gbrowse : chr3L:21187848-21189953 (-) // 100.0 //
Probeset : 1629967_s_at
Accessions : protein= NP_730600; /// NP_730601;, nucleotide= NM_168884; /// NM_168885;
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from direct assay /// 0004842 // ubiquitin-protein ligase activ
FlyMine data for FBgn0041100.
Homophila reports that CG10523 is a close match (5e-76) to human gene LPRS2;PARK2;PDJ;PRKN (NP_054643), a gene associated with Adenocarcinoma of lung, somatic, 211980 (3);Adenocarcinoma, ovarian, somatic, 604370 (3);Parkinson disease, juvenile, type 2, 600116 (3);{Leprosy, susceptibility to}, 607572 (3).
BioGrid reports that CG10523 interacts with CG12860 CG11094 CG13159 CG1725 CG5134 CG9653 .
TRiP has 3 RNAi stocks for FBgn0041100 available for purchase.
VDRC has 4 RNAi stocks for FBgn0041100 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain79 ± 24 of 4 1.50Up
Head50 ± 24 of 4 0.90None
Eye76 ± 64 of 4 1.42Up
Thoracicoabdominal ganglion82 ± 44 of 4 1.50Up
Salivary gland76 ± 24 of 4 1.41Up
Crop69 ± 24 of 4 1.30Up
Midgut24 ± 33 of 4 0.40Down
Tubule63 ± 14 of 4 1.20Up
Hindgut54 ± 34 of 4 1.00None
Heart67 ± 24 of 4 1.25Up
Fat body65 ± 64 of 4 1.21Up
Ovary55 ± 34 of 4 1.00None
Testis203 ± 104 of 4 3.80Up
Male accessory glands32 ± 23 of 4 0.60Down
Virgin spermatheca42 ± 24 of 4 0.79Down
Mated spermatheca43 ± 34 of 4 0.81None
Adult carcass70 ± 54 of 4 1.30None
Larval CNS41 ± 94 of 4 0.77None
Larval Salivary gland44 ± 44 of 4 0.82None
Larval midgut31 ± 33 of 4 0.58Down
Larval tubule68 ± 24 of 4 1.30Up
Larval hindgut47 ± 24 of 4 0.87None
Larval fat body56 ± 64 of 4 1.00None
Larval trachea45 ± 114 of 4 0.84None
Larval carcass61 ± 64 of 4 1.14None
S2 cells (growing)53 ± 54 of 4 0.99None
Whole fly54 ± 24 of 4

Looking for FBgn0041100. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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