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FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0041102 through 18771 annotations produced 1 hits


ocnus (ocn):

Annotation Number : CG7929
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041102
Gbrowse : chr3R:25862716-25863452 (-) // 100.0 //
Probeset : 1639413_at
Accessions : protein= NP_524578;, nucleotide= NM_079839;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0041102.
BDGP gene expression has embryonic in situ data for ocn: 2 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0041102 available for purchase.
VDRC has 1 RNAi stocks for FBgn0041102 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head4 ± 21 of 4 0.00Down
Eye2 ± 10 of 4 0.00Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland3 ± 10 of 4 0.00Down
Crop4 ± 20 of 4 0.00Down
Midgut0 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart2 ± 10 of 4 0.00Down
Fat body2 ± 20 of 4 0.00Down
Ovary0 ± 00 of 4 0.00Down
Testis3557 ± 1874 of 4 5.50Up
Male accessory glands5 ± 10 of 4 0.00Down
Virgin spermatheca0 ± 00 of 4 0.00Down
Mated spermatheca3 ± 10 of 4 0.01Down
Adult carcass33 ± 113 of 4 0.10Down
Larval CNS0 ± 00 of 4 0.00Down
Larval Salivary gland1 ± 00 of 4 0.00Down
Larval midgut3 ± 11 of 4 0.01Down
Larval tubule1 ± 10 of 4 0.00Down
Larval hindgut2 ± 00 of 4 0.00Down
Larval fat body678 ± 3004 of 4 1.00None
Larval trachea38 ± 682 of 4 0.06Down
Larval carcass4 ± 01 of 4 0.01Down
S2 cells (growing)2 ± 00 of 4 0.00Down
Whole fly647 ± 1084 of 4

Looking for FBgn0041102. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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