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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0041111 through 18771 annotations produced 3 hits



chr2L:2885951-2952597 (+) // 100.0 // (lilliputian):

Annotation Number : CG8817
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1635264_s_at
Accessions : protein= , nucleotide= NP_001137772; /// NP_001137773; /// NP_001137774; /// NP_001137775; /// NP_523464; /// NP_722863; /// NP_722864;
Pathway : "0000915 // cytokinesis
Interpro : actomyosin contractile ring assembly // non-traceable author statement /// 0006350 // transcription // inferred from el
FlyMine data for full length.
BioGrid reports that CG8817 interacts with CG3166 CG3166 CG11579 CG9885 CG2845 CG2845 CG9375 CG9375 CG9375 CG9375 CG12559 CG12559 CG9949 CG9949 CG10079 CG1389 CG1856 CG4319 CG10108 CG8416 CG4141 CG5671 CG5671 CG9375 CG9375 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 20 of 4 0.60Down
Head5 10 of 4 0.50None
Eye61 24 of 4 5.62Up
Thoracicoabdominal ganglion7 20 of 4 0.70None
Salivary gland14 21 of 4 1.35None
Crop5 10 of 4 0.50Down
Midgut3 10 of 4 0.30Down
Tubule3 00 of 4 0.30Down
Hindgut5 10 of 4 0.50Down
Heart74 54 of 4 6.78Up
Fat body9 80 of 4 0.90None
Ovary10 11 of 4 1.00None
Testis157 54 of 414.40Up
Male accessory glands13 10 of 4 1.20None
Virgin spermatheca8 01 of 4 0.78None
Mated spermatheca7 21 of 4 0.69None
Adult carcass13 62 of 4 1.20None
Larval CNS4 10 of 4 0.40Down
Larval Salivary gland13 21 of 4 1.24None
Larval midgut15 30 of 4 1.41None
Larval tubule2 10 of 4 0.30Down
Larval hindgut9 12 of 4 0.87None
Larval fat body29 111 of 4 2.70None
Larval trachea51 14 of 4 4.68Up
Larval carcass11 13 of 4 1.04None
S2 cells (growing)24 04 of 4 2.27Up
Whole fly11 02 of 4



lilliputian (lilli):

Annotation Number : GM02019
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041111
Gbrowse : chr2L:2885951-2945194 (+) // 99.8 //
Probeset : 1623171_s_at
Accessions : protein= NP_001137772; /// NP_001137773; /// NP_001137774; /// NP_001137775; /// NP_523464; /// NP_722863; /// NP_722864;, nucleotide= NM_001144300; /// NM_001144301; /// NM_001144302; /// NM_001144303; /// NM_078740; /// NM_164516; /// NM_164517;
Pathway : actomyosin contractile ring assembly // non-traceable author statement /// 0006350 // transcription // inferred from el
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
FlyMine data for FBgn0041111.
BDGP gene expression has embryonic in situ data for lilli: 6 pix of staining in 1 body parts.
TRiP has 2 RNAi stocks for FBgn0041111 available for purchase.
VDRC has 3 RNAi stocks for FBgn0041111 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain30 24 of 4 3.70Up
Head5 20 of 4 0.70None
Eye23 34 of 4 2.86Up
Thoracicoabdominal ganglion7 11 of 4 0.90None
Salivary gland4 30 of 4 0.59None
Crop9 20 of 4 1.10None
Midgut9 11 of 4 1.20None
Tubule5 10 of 4 0.60Down
Hindgut21 14 of 4 2.60Up
Heart46 44 of 4 5.54Up
Fat body13 61 of 4 1.62None
Ovary17 14 of 4 2.10Up
Testis8 23 of 4 1.00None
Male accessory glands9 10 of 4 1.10None
Virgin spermatheca8 11 of 4 1.04None
Mated spermatheca11 12 of 4 1.31None
Adult carcass10 40 of 4 1.30None
Larval CNS7 53 of 4 0.93None
Larval Salivary gland9 10 of 4 1.09None
Larval midgut5 10 of 4 0.69None
Larval tubule7 10 of 4 0.90None
Larval hindgut11 01 of 4 1.32None
Larval fat body7 10 of 4 0.90None
Larval trachea23 84 of 4 2.87Up
Larval carcass10 20 of 4 1.21None
S2 cells (growing)29 14 of 4 3.52Up
Whole fly8 10 of 4



lilliputian (lilli):

Annotation Number : S.C2L000399
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041111
Gbrowse : chr2L:2901767-2940278 (+) // 100.0 //
Probeset : 1626159_at
Accessions : protein= NP_001137772; /// NP_001137773; /// NP_001137774; /// NP_001137775; /// NP_523464; /// NP_722863; /// NP_722864;, nucleotide= NM_001144300; /// NM_001144301; /// NM_001144302; /// NM_001144303; /// NM_078740; /// NM_164516; /// NM_164517;
Pathway : actomyosin contractile ring assembly // non-traceable author statement /// 0006350 // transcription // inferred from el
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
FlyMine data for FBgn0041111.
BDGP gene expression has embryonic in situ data for lilli: 6 pix of staining in 1 body parts.
TRiP has 2 RNAi stocks for FBgn0041111 available for purchase.
VDRC has 3 RNAi stocks for FBgn0041111 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 01 of 4 1.80None
Head2 10 of 4 0.90None
Eye2 00 of 4 0.79None
Thoracicoabdominal ganglion6 00 of 4 2.30Up
Salivary gland14 32 of 4 5.38Up
Crop7 01 of 4 2.90Up
Midgut7 12 of 4 2.90Up
Tubule4 01 of 4 1.60Up
Hindgut5 11 of 4 1.90None
Heart1 10 of 4 0.60None
Fat body7 11 of 4 2.62Up
Ovary1 00 of 4 0.60None
Testis4 11 of 4 1.60None
Male accessory glands5 21 of 4 2.10None
Virgin spermatheca4 10 of 4 1.66None
Mated spermatheca4 10 of 4 1.64None
Adult carcass6 10 of 4 2.30None
Larval CNS4 10 of 4 1.50None
Larval Salivary gland7 12 of 4 2.79None
Larval midgut5 21 of 4 2.07None
Larval tubule6 01 of 4 2.40Up
Larval hindgut3 01 of 4 1.33None
Larval fat body5 21 of 4 2.20None
Larval trachea4 11 of 4 1.65None
Larval carcass4 11 of 4 1.86None
S2 cells (growing)4 01 of 4 1.53None
Whole fly2 00 of 4

Looking for FBgn0041111. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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