FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0041111 through 18771 annotations produced 3 hits

lilliputian (lilli):

Annotation Number : GM02019
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041111
Gbrowse : chr2L:2885951-2945194 (+) // 99.8 //
Probeset : 1623171_s_at
Accessions : protein= NP_001137772; /// NP_001137773; /// NP_001137774; /// NP_001137775; /// NP_523464; /// NP_722863; /// NP_722864;, nucleotide= NM_001144300; /// NM_001144301; /// NM_001144302; /// NM_001144303; /// NM_078740; /// NM_164516; /// NM_164517;
Pathway : actomyosin contractile ring assembly // non-traceable author statement /// 0006350 // transcription // inferred from el
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
FlyMine data for FBgn0041111.
BDGP gene expression has embryonic in situ data for lilli: 6 pix of staining in 1 body parts.
TRiP has 2 RNAi stocks for FBgn0041111 available for purchase.
VDRC has 3 RNAi stocks for FBgn0041111 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	30 ± 2	4 of 4	3.70	Up
Head	5 ± 2	0 of 4	0.70	None
Eye	23 ± 3	4 of 4	2.86	Up
Thoracicoabdominal ganglion	7 ± 1	1 of 4	0.90	None
Salivary gland	4 ± 3	0 of 4	0.59	None
Crop	9 ± 2	0 of 4	1.10	None
Midgut	9 ± 1	1 of 4	1.20	None
Tubule	5 ± 1	0 of 4	0.60	Down
Hindgut	21 ± 1	4 of 4	2.60	Up
Heart	46 ± 4	4 of 4	5.54	Up
Fat body	13 ± 6	1 of 4	1.62	None
Ovary	17 ± 1	4 of 4	2.10	Up
Testis	8 ± 2	3 of 4	1.00	None
Male accessory glands	9 ± 1	0 of 4	1.10	None
Virgin spermatheca	8 ± 1	1 of 4	1.04	None
Mated spermatheca	11 ± 1	2 of 4	1.31	None
Adult carcass	10 ± 4	0 of 4	1.30	None
Larval CNS	7 ± 5	3 of 4	0.93	None
Larval Salivary gland	9 ± 1	0 of 4	1.09	None
Larval midgut	5 ± 1	0 of 4	0.69	None
Larval tubule	7 ± 1	0 of 4	0.90	None
Larval hindgut	11 ± 0	1 of 4	1.32	None
Larval fat body	7 ± 1	0 of 4	0.90	None
Larval trachea	23 ± 8	4 of 4	2.87	Up
Larval carcass	10 ± 2	0 of 4	1.21	None
S2 cells (growing)	29 ± 1	4 of 4	3.52	Up
Whole fly	8 ± 1	0 of 4

chr2L:2885951-2952597 (+) // 100.0 // (lilliputian):

Annotation Number : CG8817
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1635264_s_at
Accessions : protein= , nucleotide= NP_001137772; /// NP_001137773; /// NP_001137774; /// NP_001137775; /// NP_523464; /// NP_722863; /// NP_722864;
Pathway : "0000915 // cytokinesis
Interpro : actomyosin contractile ring assembly // non-traceable author statement /// 0006350 // transcription // inferred from el
FlyMine data for full length.
BioGrid reports that CG8817 interacts with CG3166 CG3166 CG11579 CG9885 CG2845 CG2845 CG9375 CG9375 CG9375 CG9375 CG12559 CG12559 CG9949 CG9949 CG10079 CG1389 CG1856 CG4319 CG10108 CG8416 CG4141 CG5671 CG5671 CG9375 CG9375 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 2	0 of 4	0.60	Down
Head	5 ± 1	0 of 4	0.50	None
Eye	61 ± 2	4 of 4	5.62	Up
Thoracicoabdominal ganglion	7 ± 2	0 of 4	0.70	None
Salivary gland	14 ± 2	1 of 4	1.35	None
Crop	5 ± 1	0 of 4	0.50	Down
Midgut	3 ± 1	0 of 4	0.30	Down
Tubule	3 ± 0	0 of 4	0.30	Down
Hindgut	5 ± 1	0 of 4	0.50	Down
Heart	74 ± 5	4 of 4	6.78	Up
Fat body	9 ± 8	0 of 4	0.90	None
Ovary	10 ± 1	1 of 4	1.00	None
Testis	157 ± 5	4 of 4	14.40	Up
Male accessory glands	13 ± 1	0 of 4	1.20	None
Virgin spermatheca	8 ± 0	1 of 4	0.78	None
Mated spermatheca	7 ± 2	1 of 4	0.69	None
Adult carcass	13 ± 6	2 of 4	1.20	None
Larval CNS	4 ± 1	0 of 4	0.40	Down
Larval Salivary gland	13 ± 2	1 of 4	1.24	None
Larval midgut	15 ± 3	0 of 4	1.41	None
Larval tubule	2 ± 1	0 of 4	0.30	Down
Larval hindgut	9 ± 1	2 of 4	0.87	None
Larval fat body	29 ± 11	1 of 4	2.70	None
Larval trachea	51 ± 1	4 of 4	4.68	Up
Larval carcass	11 ± 1	3 of 4	1.04	None
S2 cells (growing)	24 ± 0	4 of 4	2.27	Up
Whole fly	11 ± 0	2 of 4

lilliputian (lilli):

Annotation Number : S.C2L000399
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041111
Gbrowse : chr2L:2901767-2940278 (+) // 100.0 //
Probeset : 1626159_at
Accessions : protein= NP_001137772; /// NP_001137773; /// NP_001137774; /// NP_001137775; /// NP_523464; /// NP_722863; /// NP_722864;, nucleotide= NM_001144300; /// NM_001144301; /// NM_001144302; /// NM_001144303; /// NM_078740; /// NM_164516; /// NM_164517;
Pathway : actomyosin contractile ring assembly // non-traceable author statement /// 0006350 // transcription // inferred from el
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
FlyMine data for FBgn0041111.
BDGP gene expression has embryonic in situ data for lilli: 6 pix of staining in 1 body parts.
TRiP has 2 RNAi stocks for FBgn0041111 available for purchase.
VDRC has 3 RNAi stocks for FBgn0041111 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 0	1 of 4	1.80	None
Head	2 ± 1	0 of 4	0.90	None
Eye	2 ± 0	0 of 4	0.79	None
Thoracicoabdominal ganglion	6 ± 0	0 of 4	2.30	Up
Salivary gland	14 ± 3	2 of 4	5.38	Up
Crop	7 ± 0	1 of 4	2.90	Up
Midgut	7 ± 1	2 of 4	2.90	Up
Tubule	4 ± 0	1 of 4	1.60	Up
Hindgut	5 ± 1	1 of 4	1.90	None
Heart	1 ± 1	0 of 4	0.60	None
Fat body	7 ± 1	1 of 4	2.62	Up
Ovary	1 ± 0	0 of 4	0.60	None
Testis	4 ± 1	1 of 4	1.60	None
Male accessory glands	5 ± 2	1 of 4	2.10	None
Virgin spermatheca	4 ± 1	0 of 4	1.66	None
Mated spermatheca	4 ± 1	0 of 4	1.64	None
Adult carcass	6 ± 1	0 of 4	2.30	None
Larval CNS	4 ± 1	0 of 4	1.50	None
Larval Salivary gland	7 ± 1	2 of 4	2.79	None
Larval midgut	5 ± 2	1 of 4	2.07	None
Larval tubule	6 ± 0	1 of 4	2.40	Up
Larval hindgut	3 ± 0	1 of 4	1.33	None
Larval fat body	5 ± 2	1 of 4	2.20	None
Larval trachea	4 ± 1	1 of 4	1.65	None
Larval carcass	4 ± 1	1 of 4	1.86	None
S2 cells (growing)	4 ± 0	1 of 4	1.53	None
Whole fly	2 ± 0	0 of 4

Looking for FBgn0041111. 3 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720