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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0041156 through 18771 annotations produced 1 hits



extra-extra (exex):

Annotation Number : CG8254
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041156
Gbrowse : chr3L:7941290-7944667 (+) // 100.0 //
Probeset : 1637834_at
Accessions : protein= NP_648164;, nucleotide= NM_139907;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007399 // nervous system development // traceable author stat
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0041156.
BDGP gene expression has embryonic in situ data for exex: 29 pix of staining in 19 body parts.
Homophila reports that CG8254 is a close match (6e-11) to human gene IDG2;IGDS2;PITX2;RGS;RIEG1 (NP_700475), a gene associated with Iridogoniodysgenesis syndrome-2, 137600 (3);Rieger syndrome, 180500 (3);Ring dermoid of cornea, 180550 (3).
VDRC has 2 RNAi stocks for FBgn0041156 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 11 of 4 0.40Down
Head2 00 of 4 0.20Down
Eye2 21 of 4 0.22Down
Thoracicoabdominal ganglion9 14 of 4 0.90None
Salivary gland6 00 of 4 0.56None
Crop76 44 of 4 6.90Up
Midgut201 74 of 418.20Up
Tubule1 00 of 4 0.20Down
Hindgut3 10 of 4 0.30Down
Heart0 00 of 4 0.05Down
Fat body3 10 of 4 0.31Down
Ovary1 00 of 4 0.10Down
Testis2 10 of 4 0.20Down
Male accessory glands8 41 of 4 0.80None
Virgin spermatheca2 10 of 4 0.26Down
Mated spermatheca2 00 of 4 0.24Down
Adult carcass3 10 of 4 0.30Down
Larval CNS15 24 of 4 1.36None
Larval Salivary gland2 10 of 4 0.21Down
Larval midgut149 64 of 413.52Up
Larval tubule2 00 of 4 0.20Down
Larval hindgut0 00 of 4 0.05Down
Larval fat body3 10 of 4 0.30Down
Larval trachea2 20 of 4 0.19Down
Larval carcass2 00 of 4 0.24Down
S2 cells (growing)1 00 of 4 0.18Down
Whole fly11 13 of 4

Looking for FBgn0041156. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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