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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0041180 through 18771 annotations produced 1 hits



Thiolester containing protein IV (TepIV):

Annotation Number : CG10363
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041180
Gbrowse : chr2L:19549792-19556451 (+) // 99.91 //
Probeset : 1634552_at
Accessions : protein= NP_523603;, nucleotide= NM_078879;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred fr
Interpro : 0004866 // endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inf
FlyMine data for FBgn0041180.
BDGP gene expression has embryonic in situ data for TepIV: 29 pix of staining in 11 body parts.
Homophila reports that CG10363 is a close match (1e-26) to human gene C5 (NP_001726), a gene associated with C5 deficiency (1).
BioGrid reports that CG10363 interacts with CG4841 CG7182 CG2199 CG31163 CG4696 .
TRiP has 1 RNAi stocks for FBgn0041180 available for purchase.
VDRC has 2 RNAi stocks for FBgn0041180 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain34 ± 54 of 4 0.10Down
Head1103 ± 944 of 4 3.70Up
Eye880 ± 224 of 4 2.92Up
Thoracicoabdominal ganglion41 ± 44 of 4 0.10Down
Salivary gland189 ± 164 of 4 0.63Down
Crop1462 ± 484 of 4 4.90Up
Midgut380 ± 154 of 4 1.30Up
Tubule71 ± 183 of 4 0.20Down
Hindgut1778 ± 194 of 4 5.90Up
Heart878 ± 274 of 4 2.92Up
Fat body479 ± 844 of 4 1.59Up
Ovary89 ± 64 of 4 0.30Down
Testis25 ± 10 of 4 0.10Down
Male accessory glands34 ± 43 of 4 0.10Down
Virgin spermatheca759 ± 624 of 4 2.52Up
Mated spermatheca752 ± 724 of 4 2.50Up
Adult carcass1139 ± 674 of 4 3.80Up
Larval CNS33 ± 54 of 4 0.11Down
Larval Salivary gland168 ± 94 of 4 0.56Down
Larval midgut264 ± 54 of 4 0.88None
Larval tubule586 ± 664 of 4 1.90Up
Larval hindgut1879 ± 554 of 4 6.24Up
Larval fat body940 ± 1204 of 4 3.10Up
Larval trachea1801 ± 1394 of 4 5.98Up
Larval carcass535 ± 424 of 4 1.78Up
S2 cells (growing)472 ± 84 of 4 1.57Up
Whole fly301 ± 174 of 4

Looking for FBgn0041180. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime