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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0041188 through 18771 annotations produced 1 hits



dAtaxin-2 (Atx2):

Annotation Number : CG5166
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041188
Gbrowse : chr3R:11234157-11243011 (+) // 99.84 //
Probeset : 1640968_a_at
Accessions : protein= NP_650466; /// NP_732033; /// NP_732034;, nucleotide= NM_142209; /// NM_169657; /// NM_169658;
Pathway : engulfment // inferred from mutant phenotype /// 0007275 // multicellular organismal development // inferred from elect
Interpro : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation
FlyMine data for FBgn0041188.
Homophila reports that CG5166 is a close match (5e-24) to human gene ATX2;ATXN2;SCA2 (NP_002964), a gene associated with Spinocerebellar ataxia-2, 183090 (3).
BioGrid reports that CG5166 interacts with CG3978 .
TRiP has 1 RNAi stocks for FBgn0041188 available for purchase.
VDRC has 3 RNAi stocks for FBgn0041188 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain798 234 of 4 2.30Up
Head505 414 of 4 1.50Up
Eye1167 644 of 4 3.39Up
Thoracicoabdominal ganglion1122 254 of 4 3.30Up
Salivary gland542 424 of 4 1.57Up
Crop489 124 of 4 1.40Up
Midgut289 84 of 4 0.80None
Tubule346 94 of 4 1.00None
Hindgut475 94 of 4 1.40Up
Heart623 204 of 4 1.81Up
Fat body571 774 of 4 1.66Up
Ovary596 184 of 4 1.70Up
Testis205 74 of 4 0.60Down
Male accessory glands590 274 of 4 1.70Up
Virgin spermatheca471 134 of 4 1.37Up
Mated spermatheca428 304 of 4 1.24None
Adult carcass535 314 of 4 1.60Up
Larval CNS700 604 of 4 2.03Up
Larval Salivary gland553 244 of 4 1.61Up
Larval midgut339 134 of 4 0.98None
Larval tubule555 94 of 4 1.60Up
Larval hindgut443 94 of 4 1.29Up
Larval fat body485 304 of 4 1.40Up
Larval trachea492 344 of 4 1.43Up
Larval carcass453 424 of 4 1.31None
S2 cells (growing)635 194 of 4 1.84Up
Whole fly344 204 of 4

Looking for FBgn0041188. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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