Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0041203 through 18771 annotations produced 1 hits



LIM-kinase 1 (LIMK1):

Annotation Number : CG1848
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041203
Gbrowse : chrX:12478414-12486226 (-) // 100.0 //
Probeset : 1641452_a_at
Accessions : protein= NP_001162733; /// NP_001162734; /// NP_511139; /// NP_727621; /// NP_727622;, nucleotide= NM_001169262; /// NM_001169263; /// NM_078584; /// NM_167326; /// NM_167327;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // non-trace
FlyMine data for FBgn0041203.
Homophila reports that CG1848 is a close match (8e-11) to human gene ERBB3;LCCS2 (NP_001973), a gene associated with Lethal congenital contractural syndrome 2, 607598 (3).
BioGrid reports that CG1848 interacts with CG2675 CG2889 CG4264 CG4759 CG5502 CG5595 CG6716 CG6868 CG7001 CG9075 CG6238 CG33528 EG12631 .
TRiP has 2 RNAi stocks for FBgn0041203 available for purchase.
VDRC has 2 RNAi stocks for FBgn0041203 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain386 ± 114 of 4 5.60Up
Head109 ± 54 of 4 1.60Up
Eye120 ± 44 of 4 1.75Up
Thoracicoabdominal ganglion318 ± 84 of 4 4.60Up
Salivary gland189 ± 54 of 4 2.74Up
Crop110 ± 14 of 4 1.60Up
Midgut94 ± 04 of 4 1.40Up
Tubule40 ± 04 of 4 0.60Down
Hindgut116 ± 14 of 4 1.70Up
Heart72 ± 34 of 4 1.05None
Fat body76 ± 154 of 4 1.11None
Ovary159 ± 24 of 4 2.30Up
Testis12 ± 04 of 4 0.20Down
Male accessory glands77 ± 34 of 4 1.10None
Virgin spermatheca89 ± 64 of 4 1.30None
Mated spermatheca95 ± 14 of 4 1.39Up
Adult carcass81 ± 44 of 4 1.20None
Larval CNS190 ± 154 of 4 2.76Up
Larval Salivary gland104 ± 44 of 4 1.51Up
Larval midgut62 ± 24 of 4 0.90None
Larval tubule52 ± 34 of 4 0.80None
Larval hindgut79 ± 24 of 4 1.15None
Larval fat body43 ± 14 of 4 0.60Down
Larval trachea109 ± 134 of 4 1.59Up
Larval carcass96 ± 34 of 4 1.41Up
S2 cells (growing)162 ± 74 of 4 2.36Up
Whole fly68 ± 54 of 4

Looking for FBgn0041203. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime