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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0041210 through 18771 annotations produced 1 hits



HDAC4 (HDAC4):

Annotation Number : CG1770
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041210
Gbrowse : chrX:13156912-13179354 (-) // 100.0 //
Probeset : 1635284_a_at
Accessions : protein= NP_001014736; /// NP_572868; /// NP_727682;, nucleotide= NM_001014736; /// NM_132640; /// NM_167356;
Pathway : 0000118 // histone deacetylase complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from di
Interpro : 0004407 // histone deacetylase activity // inferred from direct assay /// 0004407 // histone deacetylase activity // inf
FlyMine data for FBgn0041210.
BioGrid reports that CG1770 interacts with CG17870 .
TRiP has 2 RNAi stocks for FBgn0041210 available for purchase.
VDRC has 1 RNAi stocks for FBgn0041210 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain439 84 of 427.20Up
Head69 54 of 4 4.30Up
Eye124 44 of 4 7.74Up
Thoracicoabdominal ganglion292 164 of 418.10Up
Salivary gland34 64 of 4 2.16None
Crop39 24 of 4 2.40Up
Midgut20 14 of 4 1.30Up
Tubule10 11 of 4 0.60Down
Hindgut36 14 of 4 2.20Up
Heart31 34 of 4 1.96Up
Fat body31 24 of 4 1.96Up
Ovary3 02 of 4 0.20Down
Testis3 00 of 4 0.20Down
Male accessory glands19 23 of 4 1.20None
Virgin spermatheca30 24 of 4 1.91Up
Mated spermatheca35 74 of 4 2.18None
Adult carcass30 04 of 4 1.90Up
Larval CNS172 154 of 410.69Up
Larval Salivary gland40 24 of 4 2.52Up
Larval midgut15 24 of 4 0.98None
Larval tubule13 14 of 4 0.80None
Larval hindgut24 24 of 4 1.54Up
Larval fat body29 44 of 4 1.80None
Larval trachea36 34 of 4 2.24Up
Larval carcass32 14 of 4 1.99Up
S2 cells (growing)37 14 of 4 2.32Up
Whole fly16 04 of 4

Looking for FBgn0041210. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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