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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0041237 through 18771 annotations produced 1 hits



Gustatory receptor 58c (Gr58c):

Annotation Number : CG13491
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041237
Gbrowse : chr2R:17864166-17865462 (+) // 100.0 //
Probeset : 1623947_at
Accessions : protein= NP_726133;, nucleotide= NM_166489;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0041237.
VDRC has 4 RNAi stocks for FBgn0041237 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 1.40None
Head0 00 of 4 0.80None
Eye1 10 of 4 2.60None
Thoracicoabdominal ganglion1 00 of 4 2.10None
Salivary gland5 30 of 4 7.83None
Crop2 10 of 4 3.30None
Midgut1 00 of 4 1.70None
Tubule2 00 of 4 3.30Up
Hindgut1 00 of 4 1.70None
Heart0 00 of 4 0.80None
Fat body3 20 of 4 4.33None
Ovary0 00 of 4 0.70None
Testis1 00 of 4 2.10None
Male accessory glands1 00 of 4 2.30None
Virgin spermatheca1 00 of 4 2.03None
Mated spermatheca3 10 of 4 4.57None
Adult carcass2 10 of 4 3.30None
Larval CNS1 20 of 4 2.43None
Larval Salivary gland1 00 of 4 1.87None
Larval midgut1 00 of 4 2.00None
Larval tubule1 00 of 4 1.70None
Larval hindgut1 00 of 4 1.27None
Larval fat body3 20 of 4 4.80None
Larval trachea0 00 of 4 0.87None
Larval carcass0 00 of 4 1.07None
S2 cells (growing)0 00 of 4 0.67None
Whole fly0 00 of 4

Looking for FBgn0041237. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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