FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0041248 through 18771 annotations produced 3 hits

Gustatory receptor 23a (Gr23a):

Annotation Number : CG15396
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041248
Gbrowse : chr2L:2669783-2672159 (+) // 100.0 //
Probeset : 1627186_at
Accessions : protein= NP_523459; /// NP_787965;, nucleotide= NM_078735; /// NM_175951;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0041248.
VDRC has 2 RNAi stocks for FBgn0041248 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 1	0 of 4	0.50	None
Head	6 ± 0	0 of 4	0.80	None
Eye	2 ± 1	0 of 4	0.28	Down
Thoracicoabdominal ganglion	4 ± 1	0 of 4	0.60	None
Salivary gland	10 ± 4	0 of 4	1.39	None
Crop	8 ± 1	1 of 4	1.10	None
Midgut	10 ± 3	0 of 4	1.30	None
Tubule	5 ± 1	0 of 4	0.70	None
Hindgut	9 ± 1	0 of 4	1.20	None
Heart	4 ± 1	0 of 4	0.53	None
Fat body	9 ± 4	1 of 4	1.20	None
Ovary	3 ± 1	0 of 4	0.50	None
Testis	4 ± 1	0 of 4	0.60	None
Male accessory glands	11 ± 4	1 of 4	1.40	None
Virgin spermatheca	6 ± 1	0 of 4	0.86	None
Mated spermatheca	4 ± 1	0 of 4	0.59	None
Adult carcass	14 ± 1	0 of 4	1.90	Up
Larval CNS	4 ± 2	0 of 4	0.57	None
Larval Salivary gland	8 ± 1	0 of 4	1.03	None
Larval midgut	14 ± 3	2 of 4	1.88	None
Larval tubule	5 ± 1	0 of 4	0.70	None
Larval hindgut	8 ± 0	1 of 4	1.10	None
Larval fat body	11 ± 3	0 of 4	1.50	None
Larval trachea	4 ± 1	0 of 4	0.52	None
Larval carcass	10 ± 0	2 of 4	1.31	None
S2 cells (growing)	6 ± 0	1 of 4	0.87	None
Whole fly	7 ± 1	0 of 4

Gustatory receptor 23a (Gr23a):

Annotation Number : CG15396
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041248
Gbrowse : chr2L:2670922-2672159 (+) // 100.0 //
Probeset : 1636042_at
Accessions : protein= NP_523459; /// NP_787965;, nucleotide= NM_078735; /// NM_175951;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0041248.
VDRC has 2 RNAi stocks for FBgn0041248 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 0	0 of 4	1.30	None
Head	4 ± 1	0 of 4	1.60	None
Eye	2 ± 2	0 of 4	0.96	None
Thoracicoabdominal ganglion	2 ± 1	0 of 4	0.70	None
Salivary gland	10 ± 1	0 of 4	3.24	Up
Crop	3 ± 1	0 of 4	1.20	None
Midgut	6 ± 1	0 of 4	2.10	None
Tubule	4 ± 0	0 of 4	1.50	Up
Hindgut	1 ± 0	0 of 4	0.50	None
Heart	3 ± 1	0 of 4	1.19	None
Fat body	4 ± 0	0 of 4	1.53	None
Ovary	2 ± 1	0 of 4	0.90	None
Testis	2 ± 1	0 of 4	0.80	None
Male accessory glands	4 ± 2	1 of 4	1.60	None
Virgin spermatheca	3 ± 0	0 of 4	1.27	None
Mated spermatheca	4 ± 1	0 of 4	1.55	None
Adult carcass	9 ± 2	0 of 4	2.90	None
Larval CNS	1 ± 0	0 of 4	0.62	None
Larval Salivary gland	4 ± 1	0 of 4	1.48	None
Larval midgut	7 ± 1	0 of 4	2.38	Up
Larval tubule	5 ± 0	0 of 4	1.60	None
Larval hindgut	4 ± 1	0 of 4	1.31	None
Larval fat body	10 ± 3	0 of 4	3.40	None
Larval trachea	2 ± 1	0 of 4	0.77	None
Larval carcass	4 ± 1	1 of 4	1.31	None
S2 cells (growing)	3 ± 0	0 of 4	1.19	None
Whole fly	3 ± 1	1 of 4

Gustatory receptor 23a (Gr23a):

Annotation Number : CG15396
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041248
Gbrowse : chr2L:2669783-2672159 (+) // 100.0 //
Probeset : 1637921_a_at
Accessions : protein= NP_523459; /// NP_787965;, nucleotide= NM_078735; /// NM_175951;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0041248.
VDRC has 2 RNAi stocks for FBgn0041248 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	0 ± 0	0 of 4	0.50	None
Head	1 ± 0	0 of 4	1.10	None
Eye	0 ± 0	0 of 4	0.46	None
Thoracicoabdominal ganglion	0 ± 0	0 of 4	0.60	None
Salivary gland	4 ± 2	0 of 4	4.41	None
Crop	1 ± 0	0 of 4	1.20	None
Midgut	1 ± 0	0 of 4	1.30	None
Tubule	1 ± 0	0 of 4	1.10	None
Hindgut	0 ± 0	0 of 4	0.80	None
Heart	0 ± 0	0 of 4	0.37	None
Fat body	1 ± 1	0 of 4	1.80	None
Ovary	0 ± 0	0 of 4	0.20	None
Testis	1 ± 0	0 of 4	1.00	None
Male accessory glands	0 ± 0	0 of 4	0.60	None
Virgin spermatheca	0 ± 0	0 of 4	0.80	None
Mated spermatheca	0 ± 0	0 of 4	0.71	None
Adult carcass	3 ± 1	0 of 4	3.10	None
Larval CNS	0 ± 0	0 of 4	0.54	None
Larval Salivary gland	1 ± 0	0 of 4	1.51	None
Larval midgut	1 ± 0	0 of 4	1.07	None
Larval tubule	1 ± 0	0 of 4	1.10	None
Larval hindgut	0 ± 0	0 of 4	0.78	None
Larval fat body	1 ± 0	0 of 4	1.40	None
Larval trachea	0 ± 0	0 of 4	0.66	None
Larval carcass	1 ± 0	0 of 4	1.27	None
S2 cells (growing)	0 ± 0	0 of 4	0.78	None
Whole fly	1 ± 0	0 of 4

Looking for FBgn0041248. 3 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720