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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0041248 through 18771 annotations produced 3 hits



Gustatory receptor 23a (Gr23a):

Annotation Number : CG15396
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041248
Gbrowse : chr2L:2670922-2672159 (+) // 100.0 //
Probeset : 1636042_at
Accessions : protein= NP_523459; /// NP_787965;, nucleotide= NM_078735; /// NM_175951;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0041248.
VDRC has 2 RNAi stocks for FBgn0041248 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 00 of 4 1.30None
Head4 10 of 4 1.60None
Eye2 20 of 4 0.96None
Thoracicoabdominal ganglion2 10 of 4 0.70None
Salivary gland10 10 of 4 3.24Up
Crop3 10 of 4 1.20None
Midgut6 10 of 4 2.10None
Tubule4 00 of 4 1.50Up
Hindgut1 00 of 4 0.50None
Heart3 10 of 4 1.19None
Fat body4 00 of 4 1.53None
Ovary2 10 of 4 0.90None
Testis2 10 of 4 0.80None
Male accessory glands4 21 of 4 1.60None
Virgin spermatheca3 00 of 4 1.27None
Mated spermatheca4 10 of 4 1.55None
Adult carcass9 20 of 4 2.90None
Larval CNS1 00 of 4 0.62None
Larval Salivary gland4 10 of 4 1.48None
Larval midgut7 10 of 4 2.38Up
Larval tubule5 00 of 4 1.60None
Larval hindgut4 10 of 4 1.31None
Larval fat body10 30 of 4 3.40None
Larval trachea2 10 of 4 0.77None
Larval carcass4 11 of 4 1.31None
S2 cells (growing)3 00 of 4 1.19None
Whole fly3 11 of 4



Gustatory receptor 23a (Gr23a):

Annotation Number : CG15396
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041248
Gbrowse : chr2L:2669783-2672159 (+) // 100.0 //
Probeset : 1637921_a_at
Accessions : protein= NP_523459; /// NP_787965;, nucleotide= NM_078735; /// NM_175951;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0041248.
VDRC has 2 RNAi stocks for FBgn0041248 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.50None
Head1 00 of 4 1.10None
Eye0 00 of 4 0.46None
Thoracicoabdominal ganglion0 00 of 4 0.60None
Salivary gland4 20 of 4 4.41None
Crop1 00 of 4 1.20None
Midgut1 00 of 4 1.30None
Tubule1 00 of 4 1.10None
Hindgut0 00 of 4 0.80None
Heart0 00 of 4 0.37None
Fat body1 10 of 4 1.80None
Ovary0 00 of 4 0.20None
Testis1 00 of 4 1.00None
Male accessory glands0 00 of 4 0.60None
Virgin spermatheca0 00 of 4 0.80None
Mated spermatheca0 00 of 4 0.71None
Adult carcass3 10 of 4 3.10None
Larval CNS0 00 of 4 0.54None
Larval Salivary gland1 00 of 4 1.51None
Larval midgut1 00 of 4 1.07None
Larval tubule1 00 of 4 1.10None
Larval hindgut0 00 of 4 0.78None
Larval fat body1 00 of 4 1.40None
Larval trachea0 00 of 4 0.66None
Larval carcass1 00 of 4 1.27None
S2 cells (growing)0 00 of 4 0.78None
Whole fly1 00 of 4



Gustatory receptor 23a (Gr23a):

Annotation Number : CG15396
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041248
Gbrowse : chr2L:2669783-2672159 (+) // 100.0 //
Probeset : 1627186_at
Accessions : protein= NP_523459; /// NP_787965;, nucleotide= NM_078735; /// NM_175951;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0041248.
VDRC has 2 RNAi stocks for FBgn0041248 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.50None
Head6 00 of 4 0.80None
Eye2 10 of 4 0.28Down
Thoracicoabdominal ganglion4 10 of 4 0.60None
Salivary gland10 40 of 4 1.39None
Crop8 11 of 4 1.10None
Midgut10 30 of 4 1.30None
Tubule5 10 of 4 0.70None
Hindgut9 10 of 4 1.20None
Heart4 10 of 4 0.53None
Fat body9 41 of 4 1.20None
Ovary3 10 of 4 0.50None
Testis4 10 of 4 0.60None
Male accessory glands11 41 of 4 1.40None
Virgin spermatheca6 10 of 4 0.86None
Mated spermatheca4 10 of 4 0.59None
Adult carcass14 10 of 4 1.90Up
Larval CNS4 20 of 4 0.57None
Larval Salivary gland8 10 of 4 1.03None
Larval midgut14 32 of 4 1.88None
Larval tubule5 10 of 4 0.70None
Larval hindgut8 01 of 4 1.10None
Larval fat body11 30 of 4 1.50None
Larval trachea4 10 of 4 0.52None
Larval carcass10 02 of 4 1.31None
S2 cells (growing)6 01 of 4 0.87None
Whole fly7 10 of 4

Looking for FBgn0041248. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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