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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0041337 through 18771 annotations produced 1 hits



Cyp309a2 (Cyp309a2):

Annotation Number : CG18559
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041337
Gbrowse : chr2L:2564885-2573047 (-) // 99.78 //
Probeset : 1634664_at
Accessions : protein= NP_608689;, nucleotide= NM_134845;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0041337.
Homophila reports that CG18559 is a close match (9e-11) to human gene CYP2A;CYP2A3;CYP2A6;P450C2A (NP_000753), a gene associated with Coumarin resistance, 122700 (3);{Lung cancer, resistance to}, 211980 (3);{Nicotine addiction, protection from}, 188890 (3).
BioGrid reports that CG18559 interacts with CG9986 .
VDRC has 3 RNAi stocks for FBgn0041337 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 00 of 4 0.20Down
Head92 174 of 4 3.20Up
Eye42 134 of 4 1.45None
Thoracicoabdominal ganglion6 10 of 4 0.20Down
Salivary gland6 30 of 4 0.21Down
Crop3 10 of 4 0.10Down
Midgut4 10 of 4 0.20Down
Tubule6 00 of 4 0.20Down
Hindgut12 12 of 4 0.40Down
Heart119 64 of 4 4.09Up
Fat body328 514 of 411.24Up
Ovary1 00 of 4 0.00Down
Testis104 74 of 4 3.60Up
Male accessory glands4 20 of 4 0.10Down
Virgin spermatheca387 104 of 413.27Up
Mated spermatheca186 194 of 4 6.37Up
Adult carcass83 94 of 4 2.90Up
Larval CNS1 00 of 4 0.05Down
Larval Salivary gland2 00 of 4 0.09Down
Larval midgut0 00 of 4 0.02Down
Larval tubule3 10 of 4 0.10Down
Larval hindgut2 00 of 4 0.08Down
Larval fat body16 82 of 4 0.60None
Larval trachea2 20 of 4 0.08Down
Larval carcass0 00 of 4 0.03Down
S2 cells (growing)2 10 of 4 0.07Down
Whole fly29 44 of 4

Looking for FBgn0041337. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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