FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0041342 through 18771 annotations produced 1 hits

Phosphocholine cytidylyltransferase (Cct1):

Annotation Number : CG1049
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041342
Gbrowse : chr3L:1546080-1553235 (+) // 100.0 //
Probeset : 1629930_s_at
Accessions : protein= NP_647621; /// NP_728626; /// NP_728627; /// NP_728628;, nucleotide= NM_139364; /// NM_167892; /// NM_167893; /// NM_167894;
Pathway : 0005634 // nucleus // inferred from direct assay
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004105 // choline-phosphate cytidylyltransfera
FlyMine data for FBgn0041342.
BDGP gene expression has embryonic in situ data for Cct1: 38 pix of staining in 15 body parts.
BioGrid reports that CG1049 interacts with CG17666 CG17777 CG6519 CG8942 .
VDRC has 2 RNAi stocks for FBgn0041342 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	574 ± 19	4 of 4	2.40	Up
Head	292 ± 13	4 of 4	1.20	Up
Eye	253 ± 27	4 of 4	1.05	None
Thoracicoabdominal ganglion	879 ± 20	4 of 4	3.70	Up
Salivary gland	903 ± 37	4 of 4	3.76	Up
Crop	548 ± 12	4 of 4	2.30	Up
Midgut	231 ± 6	4 of 4	1.00	None
Tubule	346 ± 23	4 of 4	1.40	Up
Hindgut	273 ± 4	4 of 4	1.10	Up
Heart	316 ± 20	4 of 4	1.32	Up
Fat body	461 ± 47	4 of 4	1.92	Up
Ovary	170 ± 5	4 of 4	0.70	Down
Testis	208 ± 3	4 of 4	0.90	None
Male accessory glands	704 ± 17	4 of 4	2.90	Up
Virgin spermatheca	532 ± 60	4 of 4	2.22	Up
Mated spermatheca	397 ± 10	4 of 4	1.65	Up
Adult carcass	522 ± 29	4 of 4	2.20	Up
Larval CNS	254 ± 7	4 of 4	1.06	None
Larval Salivary gland	679 ± 38	4 of 4	2.83	Up
Larval midgut	276 ± 40	4 of 4	1.15	None
Larval tubule	163 ± 4	4 of 4	0.70	Down
Larval hindgut	373 ± 24	4 of 4	1.55	Up
Larval fat body	232 ± 27	4 of 4	1.00	None
Larval trachea	200 ± 22	4 of 4	0.83	Down
Larval carcass	181 ± 5	4 of 4	0.75	Down
S2 cells (growing)	1059 ± 17	4 of 4	4.42	Up
Whole fly	240 ± 11	4 of 4

Looking for FBgn0041342. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720