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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0041585 through 18771 annotations produced 2 hits



lethal (2) k11505 (olf186-F):

Annotation Number : CG11430
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041585
Gbrowse : chr2R:13738383-13743293 (+) // 100.0 //
Probeset : 1637534_at
Accessions : protein= NP_001137696; /// NP_611273; /// NP_725727; /// NP_725728; /// NP_995881;, nucleotide= NM_001144224; /// NM_137429; /// NM_170626; /// NM_170627; /// NM_206159;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // non-trac
Interpro : 0004252 // serine-type endopeptidase activity // non-traceable author statement /// 0005216 // ion channel activity // i
FlyMine data for FBgn0041585.
BDGP gene expression has embryonic in situ data for olf186-F: 4 pix of staining in 1 body parts.
Homophila reports that CG11430 is a close match (3e-53) to human gene TMEM142A;CRACM1;ORAT1 (NP_116179), a gene associated with Severe combined immunodeficiency, autosomal recessive, with CRAC channel dysfunction (3).
BioGrid reports that CG11430 interacts with CG2851 .
VDRC has 2 RNAi stocks for FBgn0041585 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain68 34 of 4 1.20None
Head41 34 of 4 0.70None
Eye129 134 of 4 2.21Up
Thoracicoabdominal ganglion79 84 of 4 1.30None
Salivary gland22 21 of 4 0.39Down
Crop24 43 of 4 0.40Down
Midgut25 14 of 4 0.40Down
Tubule42 24 of 4 0.70Down
Hindgut57 64 of 4 1.00None
Heart36 44 of 4 0.62None
Fat body49 104 of 4 0.85None
Ovary155 74 of 4 2.70Up
Testis33 04 of 4 0.60None
Male accessory glands28 34 of 4 0.50Down
Virgin spermatheca49 34 of 4 0.84None
Mated spermatheca47 64 of 4 0.81None
Adult carcass60 34 of 4 1.00None
Larval CNS141 174 of 4 2.42Up
Larval Salivary gland75 84 of 4 1.29None
Larval midgut67 64 of 4 1.15None
Larval tubule32 54 of 4 0.60None
Larval hindgut75 124 of 4 1.28None
Larval fat body46 44 of 4 0.80None
Larval trachea63 174 of 4 1.08None
Larval carcass70 124 of 4 1.19None
S2 cells (growing)314 74 of 4 5.36Up
Whole fly58 94 of 4



lethal (2) k11505 (olf186-F):

Annotation Number : CG11430
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041585
Gbrowse : chr2R:13730949-13748075 (+) // 100.0 //
Probeset : 1625514_s_at
Accessions : protein= NP_001137696; /// NP_611273; /// NP_725727; /// NP_725728; /// NP_995881;, nucleotide= NM_001144224; /// NM_137429; /// NM_170626; /// NM_170627; /// NM_206159;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // non-trac
Interpro : 0004252 // serine-type endopeptidase activity // non-traceable author statement /// 0005216 // ion channel activity // i
FlyMine data for FBgn0041585.
BDGP gene expression has embryonic in situ data for olf186-F: 4 pix of staining in 1 body parts.
Homophila reports that CG11430 is a close match (3e-53) to human gene TMEM142A;CRACM1;ORAT1 (NP_116179), a gene associated with Severe combined immunodeficiency, autosomal recessive, with CRAC channel dysfunction (3).
BioGrid reports that CG11430 interacts with CG2851 .
VDRC has 2 RNAi stocks for FBgn0041585 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain185 144 of 4 1.20None
Head240 134 of 4 1.50Up
Eye235 314 of 4 1.49None
Thoracicoabdominal ganglion204 44 of 4 1.30Up
Salivary gland90 84 of 4 0.57Down
Crop143 24 of 4 0.90None
Midgut66 34 of 4 0.40Down
Tubule633 724 of 4 4.00Up
Hindgut212 94 of 4 1.30Up
Heart104 134 of 4 0.66Down
Fat body203 294 of 4 1.28None
Ovary362 254 of 4 2.30Up
Testis42 34 of 4 0.30Down
Male accessory glands103 54 of 4 0.70Down
Virgin spermatheca356 274 of 4 2.25Up
Mated spermatheca340 104 of 4 2.15Up
Adult carcass183 134 of 4 1.20None
Larval CNS121 574 of 4 0.77None
Larval Salivary gland201 184 of 4 1.27None
Larval midgut259 204 of 4 1.64Up
Larval tubule260 134 of 4 1.60Up
Larval hindgut426 274 of 4 2.69Up
Larval fat body149 124 of 4 0.90None
Larval trachea49 64 of 4 0.31Down
Larval carcass181 44 of 4 1.15None
S2 cells (growing)247 274 of 4 1.57Up
Whole fly158 154 of 4

Looking for FBgn0041585. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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