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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0041622 through 18771 annotations produced 3 hits



Odorant receptor 69a (Or69a):

Annotation Number : CG32116
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041622
Gbrowse : chr3L:12957450-12958839 (-) // 100.0 //
Probeset : 1628704_at
Accessions : protein= NP_996069; /// NP_996070;, nucleotide= NM_206347; /// NM_206348;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0041622.
VDRC has 4 RNAi stocks for FBgn0041622 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 1.60None
Head1 00 of 4 2.00None
Eye0 00 of 4 0.92None
Thoracicoabdominal ganglion0 00 of 4 1.20None
Salivary gland5 20 of 4 8.50None
Crop0 00 of 4 1.10None
Midgut0 00 of 4 0.70None
Tubule1 00 of 4 1.70None
Hindgut2 10 of 4 3.10None
Heart1 00 of 4 2.15None
Fat body2 10 of 4 3.92None
Ovary0 00 of 4 0.50None
Testis0 00 of 4 0.70None
Male accessory glands2 10 of 4 3.90None
Virgin spermatheca1 00 of 4 2.46None
Mated spermatheca2 00 of 4 3.88Up
Adult carcass1 00 of 4 1.50None
Larval CNS1 10 of 4 2.38None
Larval Salivary gland2 10 of 4 3.69None
Larval midgut0 00 of 4 0.69None
Larval tubule2 10 of 4 3.80None
Larval hindgut0 00 of 4 0.46None
Larval fat body1 00 of 4 1.80None
Larval trachea2 10 of 4 3.19None
Larval carcass1 00 of 4 1.69None
S2 cells (growing)0 00 of 4 1.08None
Whole fly0 00 of 4



Odorant receptor 69a (Or69a):

Annotation Number : CG32116
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041622
Gbrowse : chr3L:12957459-12958839 (-) // 100.0 //
Probeset : 1639973_a_at
Accessions : protein= NP_996069; /// NP_996070;, nucleotide= NM_206347; /// NM_206348;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0041622.
VDRC has 4 RNAi stocks for FBgn0041622 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.30None
Head2 10 of 4 1.80None
Eye3 10 of 4 3.06None
Thoracicoabdominal ganglion1 00 of 4 1.10None
Salivary gland3 10 of 4 2.62None
Crop1 00 of 4 0.90None
Midgut0 00 of 4 0.70None
Tubule1 00 of 4 1.00None
Hindgut1 00 of 4 0.90None
Heart0 00 of 4 0.52None
Fat body1 10 of 4 1.42None
Ovary0 00 of 4 0.50None
Testis2 00 of 4 1.60None
Male accessory glands0 00 of 4 0.70None
Virgin spermatheca1 00 of 4 1.10None
Mated spermatheca2 00 of 4 1.76None
Adult carcass1 00 of 4 1.30None
Larval CNS1 10 of 4 0.96None
Larval Salivary gland0 00 of 4 0.46None
Larval midgut1 00 of 4 1.34None
Larval tubule1 00 of 4 1.30None
Larval hindgut1 00 of 4 1.12None
Larval fat body2 10 of 4 1.60None
Larval trachea2 10 of 4 1.84None
Larval carcass1 00 of 4 1.08None
S2 cells (growing)1 00 of 4 0.80None
Whole fly1 00 of 4



Odorant receptor 69a (Or69a):

Annotation Number : CG17902
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041622
Gbrowse : chrUextra:11421547-11422210 (-) // 64.71 // /// chrUextra:15148232-15148874 (-) // 62.84 // /// chrUextra:20201661-20202256 (-) // 58.33 // /// chr3L:12959813-12960833 (-) // 100.0 //
Probeset : 1625914_at
Accessions : protein= NP_996069; /// NP_996070;, nucleotide= NM_206347; /// NM_206348;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0041622.
VDRC has 4 RNAi stocks for FBgn0041622 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 12 of 4 1.70None
Head5 12 of 4 2.30None
Eye2 11 of 4 1.00None
Thoracicoabdominal ganglion2 00 of 4 0.80None
Salivary gland12 31 of 4 5.07Up
Crop4 00 of 4 1.70None
Midgut1 00 of 4 0.60None
Tubule4 00 of 4 1.60Up
Hindgut5 01 of 4 2.20Up
Heart3 10 of 4 1.31None
Fat body3 20 of 4 1.20None
Ovary1 10 of 4 0.80None
Testis3 11 of 4 1.30None
Male accessory glands4 10 of 4 1.60None
Virgin spermatheca2 11 of 4 1.05None
Mated spermatheca5 12 of 4 2.12None
Adult carcass6 11 of 4 2.50Up
Larval CNS1 10 of 4 0.65None
Larval Salivary gland2 00 of 4 1.07None
Larval midgut1 00 of 4 0.55None
Larval tubule5 11 of 4 2.00None
Larval hindgut4 00 of 4 1.77None
Larval fat body9 20 of 4 3.70Up
Larval trachea1 11 of 4 0.67None
Larval carcass3 10 of 4 1.42None
S2 cells (growing)3 00 of 4 1.46None
Whole fly2 00 of 4

Looking for FBgn0041622. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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