FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0041627 through 18771 annotations produced 2 hits

/// Ku80 (CG31826 /// Ku80):

Annotation Number : CG31826
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051826
Gbrowse : chr2L:15771262-15773119 (-) // 99.67 //
Probeset : 1625986_at
Accessions : protein= NP_723932;, nucleotide= NM_165131;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0004003 // ATP-dependent DNA helicase activity // infe
FlyMine data for FBgn0051826.
BioGrid reports that CG31826 interacts with CG5441 CG9426 .
VDRC has 3 RNAi stocks for FBgn0051826 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	0.10	Down
Head	18 ± 2	4 of 4	0.90	None
Eye	2 ± 1	0 of 4	0.14	Down
Thoracicoabdominal ganglion	4 ± 1	0 of 4	0.20	Down
Salivary gland	28 ± 5	3 of 4	1.43	None
Crop	19 ± 0	4 of 4	1.00	None
Midgut	22 ± 1	4 of 4	1.20	None
Tubule	34 ± 2	4 of 4	1.80	Up
Hindgut	138 ± 9	4 of 4	7.10	Up
Heart	19 ± 2	4 of 4	1.01	None
Fat body	34 ± 2	4 of 4	1.76	Up
Ovary	3 ± 1	0 of 4	0.20	Down
Testis	180 ± 7	4 of 4	9.20	Up
Male accessory glands	19 ± 2	3 of 4	1.00	None
Virgin spermatheca	25 ± 4	4 of 4	1.29	None
Mated spermatheca	32 ± 2	4 of 4	1.66	Up
Adult carcass	36 ± 4	4 of 4	1.90	Up
Larval CNS	2 ± 1	1 of 4	0.13	Down
Larval Salivary gland	4 ± 1	0 of 4	0.22	Down
Larval midgut	20 ± 2	4 of 4	1.04	None
Larval tubule	4 ± 0	0 of 4	0.20	Down
Larval hindgut	13 ± 1	4 of 4	0.69	Down
Larval fat body	15 ± 5	1 of 4	0.80	None
Larval trachea	55 ± 11	4 of 4	2.84	Up
Larval carcass	16 ± 2	4 of 4	0.87	None
S2 cells (growing)	0 ± 0	0 of 4	0.04	Down
Whole fly	19 ± 1	4 of 4

Ku80 (Ku80):

Annotation Number : CG18801
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041627
Gbrowse : chr2L:15768511-15771280 (-) // 100.0 //
Probeset : 1625759_at
Accessions : protein= NP_609767;, nucleotide= NM_135923;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0017117 // single-stranded DNA-dependent ATP-dependent DNA
Interpro : "0003677 // DNA binding // inferred from electronic annotation /// 0004003 // ATP-dependent DNA helicase activity // inf
FlyMine data for FBgn0041627.
BioGrid reports that CG18801 interacts with CG5441 .
TRiP has 1 RNAi stocks for FBgn0041627 available for purchase.
VDRC has 2 RNAi stocks for FBgn0041627 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	31 ± 1	4 of 4	0.90	None
Head	22 ± 2	2 of 4	0.60	Down
Eye	10 ± 1	1 of 4	0.29	Down
Thoracicoabdominal ganglion	43 ± 2	4 of 4	1.20	None
Salivary gland	17 ± 2	0 of 4	0.50	Down
Crop	22 ± 4	2 of 4	0.60	None
Midgut	24 ± 5	1 of 4	0.70	None
Tubule	49 ± 6	4 of 4	1.40	Up
Hindgut	29 ± 2	4 of 4	0.80	None
Heart	16 ± 2	2 of 4	0.47	Down
Fat body	18 ± 3	0 of 4	0.52	Down
Ovary	68 ± 3	4 of 4	1.90	Up
Testis	60 ± 2	4 of 4	1.70	Up
Male accessory glands	23 ± 4	2 of 4	0.60	None
Virgin spermatheca	10 ± 1	0 of 4	0.29	Down
Mated spermatheca	13 ± 2	0 of 4	0.38	Down
Adult carcass	24 ± 2	0 of 4	0.70	Down
Larval CNS	51 ± 5	4 of 4	1.46	Up
Larval Salivary gland	22 ± 2	1 of 4	0.63	Down
Larval midgut	26 ± 3	0 of 4	0.75	None
Larval tubule	46 ± 2	4 of 4	1.30	Up
Larval hindgut	29 ± 0	3 of 4	0.83	None
Larval fat body	31 ± 4	3 of 4	0.90	None
Larval trachea	39 ± 3	4 of 4	1.13	None
Larval carcass	31 ± 1	3 of 4	0.88	None
S2 cells (growing)	97 ± 1	4 of 4	2.77	Up
Whole fly	35 ± 2	4 of 4

Looking for FBgn0041627. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720