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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0041702 through 18771 annotations produced 1 hits


Annotation Number : CG15107
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041702
Gbrowse : chr2R:14858813-14859943 (-) // 100.0 //
Probeset : 1638387_at
Accessions : protein= NP_660193;, nucleotide= NM_145192;
FlyMine data for FBgn0041702.
VDRC has 2 RNAi stocks for FBgn0041702 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain132 34 of 4 0.70Down
Head70 54 of 4 0.40Down
Eye60 34 of 4 0.33Down
Thoracicoabdominal ganglion90 44 of 4 0.50Down
Salivary gland92 44 of 4 0.51Down
Crop109 34 of 4 0.60Down
Midgut57 34 of 4 0.30Down
Tubule63 34 of 4 0.30Down
Hindgut71 24 of 4 0.40Down
Heart55 14 of 4 0.31Down
Fat body43 14 of 4 0.24Down
Ovary418 54 of 4 2.30Up
Testis144 44 of 4 0.80Down
Male accessory glands74 54 of 4 0.40Down
Virgin spermatheca59 24 of 4 0.32Down
Mated spermatheca66 14 of 4 0.37Down
Adult carcass54 34 of 4 0.30Down
Larval CNS223 164 of 4 1.23Up
Larval Salivary gland106 44 of 4 0.58Down
Larval midgut39 24 of 4 0.21Down
Larval tubule67 34 of 4 0.40Down
Larval hindgut63 34 of 4 0.34Down
Larval fat body90 94 of 4 0.50Down
Larval trachea154 104 of 4 0.85Down
Larval carcass71 34 of 4 0.39Down
S2 cells (growing)228 84 of 4 1.25Up
Whole fly182 44 of 4

Looking for FBgn0041702. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime