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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0041707 through 18771 annotations produced 1 hits



7B2 (7B2):

Annotation Number : CG1168
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041707
Gbrowse : chr3R:1202475-1203697 (+) // 100.0 //
Probeset : 1636249_at
Accessions : protein= NP_001014608; /// NP_620471;, nucleotide= NM_001014608; /// NM_138986;
Pathway : 0030141 // stored secretory granule // inferred from electronic annotation
Interpro : 0016504 // peptidase activator activity // inferred from direct assay
FlyMine data for FBgn0041707.
BioGrid reports that CG1168 interacts with CG15109 CG13379 CG2371 CG33017 CG4303 CG4755 CG6147 CG7021 CG8725 CG9102 CG31094 .
TRiP has 1 RNAi stocks for FBgn0041707 available for purchase.
VDRC has 2 RNAi stocks for FBgn0041707 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2459 ± 1004 of 419.10Up
Head1637 ± 484 of 412.70Up
Eye2233 ± 644 of 417.38Up
Thoracicoabdominal ganglion2391 ± 604 of 418.60Up
Salivary gland2 ± 00 of 4 0.02Down
Crop0 ± 00 of 4 0.00Down
Midgut110 ± 74 of 4 0.90None
Tubule3 ± 00 of 4 0.00Down
Hindgut25 ± 32 of 4 0.20Down
Heart21 ± 14 of 4 0.17Down
Fat body7 ± 50 of 4 0.06Down
Ovary0 ± 00 of 4 0.00Down
Testis14 ± 12 of 4 0.10Down
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.01Down
Mated spermatheca1 ± 00 of 4 0.01Down
Adult carcass50 ± 91 of 4 0.40Down
Larval CNS984 ± 504 of 4 7.65Up
Larval Salivary gland10 ± 30 of 4 0.08Down
Larval midgut99 ± 44 of 4 0.77Down
Larval tubule3 ± 20 of 4 0.00Down
Larval hindgut54 ± 64 of 4 0.43Down
Larval fat body88 ± 144 of 4 0.70None
Larval trachea86 ± 614 of 4 0.67None
Larval carcass19 ± 10 of 4 0.15Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly128 ± 84 of 4

Looking for FBgn0041707. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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