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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0041711 through 18771 annotations produced 1 hits



yellow-e (yellow-e):

Annotation Number : CG9792
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041711
Gbrowse : chr3R:9235263-9241006 (-) // 100.0 //
Probeset : 1627855_at
Accessions : protein= NP_524344;, nucleotide= NM_079620;
FlyMine data for FBgn0041711.
BDGP gene expression has embryonic in situ data for yellow-e: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0041711 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.10Down
Head94 ± 104 of 4 2.20Up
Eye34 ± 64 of 4 0.78None
Thoracicoabdominal ganglion8 ± 10 of 4 0.20Down
Salivary gland13 ± 70 of 4 0.31Down
Crop11 ± 20 of 4 0.30Down
Midgut4 ± 10 of 4 0.10Down
Tubule6 ± 10 of 4 0.20Down
Hindgut20 ± 14 of 4 0.50Down
Heart4 ± 10 of 4 0.11Down
Fat body4 ± 30 of 4 0.11Down
Ovary2 ± 00 of 4 0.00Down
Testis3 ± 00 of 4 0.10Down
Male accessory glands7 ± 20 of 4 0.20Down
Virgin spermatheca6 ± 20 of 4 0.15Down
Mated spermatheca4 ± 10 of 4 0.11Down
Adult carcass317 ± 144 of 4 7.30Up
Larval CNS4 ± 10 of 4 0.11Down
Larval Salivary gland4 ± 10 of 4 0.09Down
Larval midgut6 ± 10 of 4 0.14Down
Larval tubule6 ± 20 of 4 0.10Down
Larval hindgut391 ± 144 of 4 8.95Up
Larval fat body5 ± 20 of 4 0.10Down
Larval trachea126 ± 154 of 4 2.89Up
Larval carcass1508 ± 864 of 434.53Up
S2 cells (growing)4 ± 10 of 4 0.11Down
Whole fly43 ± 14 of 4

Looking for FBgn0041711. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime