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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0041723 through 18771 annotations produced 1 hits



rhomboid-5 (rho-5):

Annotation Number : CG5364
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041723
Gbrowse : chr2L:10367963-10375752 (-) // 100.0 //
Probeset : 1629010_at
Accessions : protein= NP_995679;, nucleotide= NM_205957;
Pathway : 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane /
Interpro : 0004252 // serine-type endopeptidase activity // inferred from electronic annotation
FlyMine data for FBgn0041723.
VDRC has 2 RNAi stocks for FBgn0041723 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain334 234 of 420.00Up
Head100 44 of 4 6.00Up
Eye97 24 of 4 5.82Up
Thoracicoabdominal ganglion269 84 of 416.10Up
Salivary gland2 10 of 4 0.15Down
Crop4 10 of 4 0.30Down
Midgut6 00 of 4 0.40Down
Tubule4 00 of 4 0.30Down
Hindgut5 10 of 4 0.30Down
Heart4 10 of 4 0.25Down
Fat body6 30 of 4 0.38Down
Ovary9 03 of 4 0.50Down
Testis9 13 of 4 0.60Down
Male accessory glands4 10 of 4 0.30Down
Virgin spermatheca4 10 of 4 0.27Down
Mated spermatheca3 10 of 4 0.19Down
Adult carcass9 10 of 4 0.60Down
Larval CNS242 164 of 414.47Up
Larval Salivary gland6 20 of 4 0.41Down
Larval midgut8 10 of 4 0.50Down
Larval tubule4 10 of 4 0.30Down
Larval hindgut5 00 of 4 0.30Down
Larval fat body3 10 of 4 0.20Down
Larval trachea8 42 of 4 0.52Down
Larval carcass5 10 of 4 0.30Down
S2 cells (growing)3 01 of 4 0.21Down
Whole fly16 14 of 4

Looking for FBgn0041723. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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