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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0041775 through 18771 annotations produced 1 hits

trailer hitch (tral):

Annotation Number : CG10686
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041775
Gbrowse : chr3L:12508126-12512807 (+) // 99.86 //
Probeset : 1625080_at
Accessions : protein= NP_648585;, nucleotide= NM_140328;
Pathway : 0005667 // transcription factor complex // inferred from physical interaction /// 0005783 // endoplasmic reticulum // in
FlyMine data for FBgn0041775.
BioGrid reports that CG10686 interacts with CG10918 CG11327 CG12034 CG12433 CG14667 CG17286 CG17870 CG3880 CG4998 CG5215 CG5837 .
TRiP has 2 RNAi stocks for FBgn0041775 available for purchase.
VDRC has 1 RNAi stocks for FBgn0041775 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain287 164 of 4 0.20Down
Head174 144 of 4 0.10Down
Eye321 204 of 4 0.24Down
Thoracicoabdominal ganglion295 204 of 4 0.20Down
Salivary gland163 264 of 4 0.12Down
Crop260 144 of 4 0.20Down
Midgut130 14 of 4 0.10Down
Tubule68 94 of 4 0.10Down
Hindgut201 124 of 4 0.20Down
Heart243 64 of 4 0.19Down
Fat body184 234 of 4 0.14Down
Ovary2073 314 of 4 1.60Up
Testis337 154 of 4 0.30Down
Male accessory glands197 84 of 4 0.10Down
Virgin spermatheca84 64 of 4 0.06Down
Mated spermatheca75 14 of 4 0.06Down
Adult carcass256 444 of 4 0.20Down
Larval CNS444 154 of 4 0.34Down
Larval Salivary gland273 114 of 4 0.21Down
Larval midgut156 64 of 4 0.12Down
Larval tubule247 204 of 4 0.20Down
Larval hindgut224 124 of 4 0.17Down
Larval fat body389 44 of 4 0.30Down
Larval trachea373 424 of 4 0.28Down
Larval carcass259 174 of 4 0.20Down
S2 cells (growing)267 74 of 4 0.20Down
Whole fly1315 764 of 4

Looking for FBgn0041775. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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