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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0041780 through 18771 annotations produced 1 hits



Strictosidine synthase-like 2 (Ssl2):

Annotation Number : CG11833
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041780
Gbrowse : chr3R:24856837-24858255 (-) // 100.0 //
Probeset : 1626047_at
Accessions : protein= NP_651656;, nucleotide= NM_143399;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0016829 // lyase activity // inferred from electron
FlyMine data for FBgn0041780.
BioGrid reports that CG11833 interacts with CG3782 CG5846 CG5502 CG7269 CG7528 .
VDRC has 2 RNAi stocks for FBgn0041780 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.50None
Head3 10 of 4 0.70None
Eye5 00 of 4 0.97None
Thoracicoabdominal ganglion4 10 of 4 0.90None
Salivary gland13 10 of 4 2.61Up
Crop5 10 of 4 1.10None
Midgut27 14 of 4 5.10Up
Tubule5 00 of 4 1.00None
Hindgut7 10 of 4 1.40None
Heart3 10 of 4 0.63None
Fat body7 51 of 4 1.47None
Ovary3 11 of 4 0.60None
Testis10 14 of 4 2.10Up
Male accessory glands4 10 of 4 0.80None
Virgin spermatheca5 10 of 4 0.94None
Mated spermatheca9 20 of 4 1.73None
Adult carcass5 20 of 4 0.90None
Larval CNS6 24 of 4 1.30None
Larval Salivary gland7 31 of 4 1.45None
Larval midgut25 14 of 4 4.80Up
Larval tubule8 10 of 4 1.60None
Larval hindgut6 00 of 4 1.28None
Larval fat body9 31 of 4 1.70None
Larval trachea2 00 of 4 0.47None
Larval carcass7 00 of 4 1.35None
S2 cells (growing)2 10 of 4 0.41None
Whole fly5 10 of 4

Looking for FBgn0041780. 1 entries matched from 18771, in 4 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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