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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0041781 through 18771 annotations produced 1 hits



P-element induced wimpy testis /// SCAR (piwi /// SCAR):

Annotation Number : CG4636
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041781
Gbrowse : chr2L:10976773-10982396 (+) // 100.0 //
Probeset : 1638871_at
Accessions : protein= NP_609477;, nucleotide= NM_135633;
Pathway : DNA-mediated // inferred from mutant phenotype /// 0001709 // cell fate determination // traceable author statement ///
Interpro : engulfment // inferred from mutant phenotype /// 0007010 // cytoskeleton organization // non-traceable author statement
FlyMine data for FBgn0041781.
BDGP gene expression has embryonic in situ data for SCAR: 6 pix of staining in 1 body parts.
TRiP has 2 RNAi stocks for FBgn0041781 available for purchase.
VDRC has 1 RNAi stocks for FBgn0041781 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain641 124 of 4 2.00Up
Head357 164 of 4 1.10None
Eye342 154 of 4 1.09None
Thoracicoabdominal ganglion563 54 of 4 1.80Up
Salivary gland418 124 of 4 1.33Up
Crop481 214 of 4 1.50Up
Midgut294 74 of 4 0.90None
Tubule283 74 of 4 0.90Down
Hindgut332 104 of 4 1.10None
Heart312 144 of 4 0.99None
Fat body292 224 of 4 0.93None
Ovary597 84 of 4 1.90Up
Testis138 64 of 4 0.40Down
Male accessory glands386 54 of 4 1.20Up
Virgin spermatheca316 284 of 4 1.00None
Mated spermatheca382 284 of 4 1.22None
Adult carcass209 64 of 4 0.70Down
Larval CNS606 404 of 4 1.93Up
Larval Salivary gland449 194 of 4 1.43Up
Larval midgut470 134 of 4 1.49Up
Larval tubule616 214 of 4 2.00Up
Larval hindgut550 124 of 4 1.75Up
Larval fat body462 254 of 4 1.50Up
Larval trachea353 44 of 4 1.12Up
Larval carcass330 134 of 4 1.05None
S2 cells (growing)868 114 of 4 2.76Up
Whole fly314 114 of 4

Looking for FBgn0041781. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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