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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0041789 through 18771 annotations produced 1 hits



paxillin (Pax):

Annotation Number : CG31794
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041789
Gbrowse : chr2L:19400774-19426424 (-) // 100.0 //
Probeset : 1626624_s_at
Accessions : protein= NP_001033913; /// NP_523601; /// NP_724183; /// NP_724184; /// NP_724185; /// NP_724186;, nucleotide= NM_001038824; /// NM_078877; /// NM_165293; /// NM_165294; /// NM_165295; /// NM_165296;
Pathway : 0005925 // focal adhesion // inferred from sequence or structural similarity /// 0005925 // focal adhesion // non-tracea
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electr
FlyMine data for FBgn0041789.
BDGP gene expression has embryonic in situ data for Pax: 24 pix of staining in 12 body parts.
Homophila reports that CG31794 is a close match (2e-11) to human gene LHX3 (NP_835258), a gene associated with Pituitary hormone deficiency, combined, with rigid cervical spine, 262600 (3).
BioGrid reports that CG31794 interacts with CG3299 CG4795 CG7602 CG6945 .
TRiP has 1 RNAi stocks for FBgn0041789 available for purchase.
VDRC has 2 RNAi stocks for FBgn0041789 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain83 24 of 4 1.00None
Head74 94 of 4 0.90None
Eye61 44 of 4 0.73None
Thoracicoabdominal ganglion138 54 of 4 1.60Up
Salivary gland372 114 of 4 4.42Up
Crop233 114 of 4 2.80Up
Midgut107 44 of 4 1.30None
Tubule84 64 of 4 1.00None
Hindgut239 74 of 4 2.80Up
Heart121 114 of 4 1.44None
Fat body105 134 of 4 1.26None
Ovary81 64 of 4 1.00None
Testis42 44 of 4 0.50None
Male accessory glands135 144 of 4 1.60None
Virgin spermatheca45 34 of 4 0.53None
Mated spermatheca76 34 of 4 0.91None
Adult carcass244 134 of 4 2.90Up
Larval CNS163 84 of 4 1.94Up
Larval Salivary gland427 224 of 4 5.07Up
Larval midgut352 184 of 4 4.18Up
Larval tubule167 144 of 4 2.00Up
Larval hindgut593 194 of 4 7.04Up
Larval fat body81 64 of 4 1.00None
Larval trachea246 174 of 4 2.92Up
Larval carcass501 294 of 4 5.96Up
S2 cells (growing)640 114 of 4 7.60Up
Whole fly84 164 of 4

Looking for FBgn0041789. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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