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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0042092 through 18771 annotations produced 1 hits



(CG13773):

Annotation Number : CG13773
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0042092
Gbrowse : chr2L:6906917-6907817 (-) // 100.0 //
Probeset : 1625444_at
Accessions : protein= NP_609081;, nucleotide= NM_135237;
Interpro : 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0016740 // transferase activi
FlyMine data for FBgn0042092.
VDRC has 2 RNAi stocks for FBgn0042092 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain38 ± 14 of 4 0.30Down
Head33 ± 14 of 4 0.20Down
Eye56 ± 34 of 4 0.41Down
Thoracicoabdominal ganglion34 ± 34 of 4 0.30Down
Salivary gland53 ± 64 of 4 0.39Down
Crop66 ± 14 of 4 0.50Down
Midgut49 ± 24 of 4 0.40Down
Tubule22 ± 24 of 4 0.20Down
Hindgut46 ± 14 of 4 0.30Down
Heart43 ± 44 of 4 0.32Down
Fat body47 ± 74 of 4 0.35Down
Ovary355 ± 44 of 4 2.60Up
Testis36 ± 14 of 4 0.30Down
Male accessory glands121 ± 44 of 4 0.90None
Virgin spermatheca30 ± 14 of 4 0.22Down
Mated spermatheca43 ± 64 of 4 0.32Down
Adult carcass42 ± 14 of 4 0.30Down
Larval CNS117 ± 64 of 4 0.86None
Larval Salivary gland51 ± 34 of 4 0.37Down
Larval midgut28 ± 54 of 4 0.21Down
Larval tubule25 ± 14 of 4 0.20Down
Larval hindgut46 ± 54 of 4 0.34Down
Larval fat body29 ± 34 of 4 0.20Down
Larval trachea146 ± 214 of 4 1.06None
Larval carcass50 ± 104 of 4 0.37Down
S2 cells (growing)93 ± 14 of 4 0.68Down
Whole fly137 ± 74 of 4

Looking for FBgn0042092. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime