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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0042094 through 18771 annotations produced 1 hits



Adenylate kinase-3 (Adk3):

Annotation Number : CG6612
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0042094
Gbrowse : chr3R:6713381-6714849 (-) // 100.0 //
Probeset : 1630986_s_at
Accessions : protein= NP_524312; /// NP_731529;, nucleotide= NM_079588; /// NM_169373;
Pathway : nucleoside
Interpro : nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0006172 // ADP biosynthetic pr
FlyMine data for FBgn0042094.
Homophila reports that CG6612 is a close match (5e-19) to human gene AK1 (NP_000467), a gene associated with Hemolytic anemia due to adenylate kinase deficiency (3).
TRiP has 1 RNAi stocks for FBgn0042094 available for purchase.
VDRC has 2 RNAi stocks for FBgn0042094 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain73 ± 34 of 4 0.40Down
Head55 ± 34 of 4 0.30Down
Eye45 ± 24 of 4 0.28Down
Thoracicoabdominal ganglion81 ± 34 of 4 0.50Down
Salivary gland103 ± 94 of 4 0.63Down
Crop101 ± 64 of 4 0.60Down
Midgut183 ± 104 of 4 1.10None
Tubule134 ± 194 of 4 0.80None
Hindgut86 ± 44 of 4 0.50Down
Heart118 ± 74 of 4 0.73Down
Fat body86 ± 44 of 4 0.53Down
Ovary88 ± 44 of 4 0.50Down
Testis1093 ± 484 of 4 6.70Up
Male accessory glands87 ± 44 of 4 0.50Down
Virgin spermatheca42 ± 32 of 4 0.26Down
Mated spermatheca33 ± 30 of 4 0.21Down
Adult carcass101 ± 74 of 4 0.60Down
Larval CNS77 ± 64 of 4 0.48Down
Larval Salivary gland270 ± 304 of 4 1.66Up
Larval midgut254 ± 294 of 4 1.55Up
Larval tubule465 ± 494 of 4 2.80Up
Larval hindgut127 ± 184 of 4 0.78None
Larval fat body320 ± 244 of 4 2.00Up
Larval trachea108 ± 254 of 4 0.66Down
Larval carcass74 ± 74 of 4 0.45Down
S2 cells (growing)45 ± 24 of 4 0.28Down
Whole fly163 ± 94 of 4

Looking for FBgn0042094. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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